1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCAATAAAGAGGAAAATTGAACAGGCAGCAACATCTGACTTTCAGATGCGTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaatccttcttttcttctatatttaaaaatgcgagggagttggatattacttttcatatgctaccattctgcacgtgcctttccaactatggta...
species | Oryza sativa |
transcript | LOC_Os08g01840.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|86425290|gb|CI070387.1|CI070387
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|29624141|gb|CB629152.1|CB629152
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|88848581|gb|CI087103.1|CI087103
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|86593910|gb|CI260139.1|CI260139
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|58676296|gb|CK064983.1|CK064983
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|58599989|gb|CK010517.1|CK010517
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|25778008|gb|CA752760.1|CA752760
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCAGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|29614832|gb|CB619845.1|CB619845
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTTEST: gi|88829339|gb|CI074209.1|CI074209
genomic: GTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
EST: CGATCCAAATGATCCGGAGGATGTG AAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
genomic: CGATCCAAATGATCCGGAGGATGTGgtaagttaat ... gtatctgcagAAAGCCACAAAGCGTAAGAAGATCCATGCATTCAAGTCAAAAGCCCGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAATAAAGAGGAAAATTGAACAGGCAGCAACATCTGACTTTCAGATGCGTAGCTTACCCACCAAACTCCGTATCGATCCAAATGATCCGGAGGATGTGgtaagttaatccttcttttcttctatatttaaaaatgcgagggagttggatattacttttcatatgctaccattctgcacgtgcctttccaactatggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgaggg