1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGGTCCCAGAACCAACAATCGAACCAAATAATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGgtattttctggtttctactttaattatgatatcatgttgtatgtatatgaagcttgcacttttgttgttccaatctcacagtacttacaatacttgatca...
species | Oryza sativa |
transcript | LOC_Os08g01740.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAG TATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGAEST: gi|27577615|gb|CB000310.1|CB000310
genomic: TTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGgtattttctg ... tatattgcagTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGA
EST: AAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCCAGTCAAG TATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGAEST: gi|58602320|gb|CK012848.1|CK012848
genomic: AAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGgtattttctg ... tatattgcagTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGA
EST: TTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAG TATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGAEST: gi|66924274|gb|CX111122.1|CX111122
genomic: TTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGgtattttctg ... tatattgcagTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGA
EST: GAAGGACAGAAGGAAGTGCGTGCGCAGCCTGTTTCCGAGTCAAG TATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGA
genomic: GAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGgtattttctg ... tatattgcagTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTCCCAGAACCAACAATCGAACCAAATAATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGgtattttctggtttctactttaattatgatatcatgttgtatgtatatgaagcttgcacttttgttgttccaatctcacagtacttacaatacttgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA