1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAAGTGTTTGTCAAAGGGCGCTGTTGACTTCTTAGTCAAGCCCATACGTAAGAATGAACTTAAGAACCTATGGCAGCATGTGTGGAGACGGTGCCACAGCgtaagttgttgttggtccagtttttcttatatattagatgttcaggcaaatccatcaagtactgactgctgcttcaccattttatggttacaatatgtgatgactctaaactaaagttgttattttcaaattcag
species | Oryza sativa |
transcript | LOC_Os07g49460.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAATGAACTTAAGAACCTATGGCAGCATGTGTGGAGACGGTGCCACAGC TCCAGTGGCAGTGGAAGTGAAAGTGGCATTCAGACACAAAAGTGTGCCAAAEST: gi|58611601|gb|CK039313.1|CK039313
genomic: AGAATGAACTTAAGAACCTATGGCAGCATGTGTGGAGACGGTGCCACAGCgtaagttgtt ... tcaaattcagTCCAGTGGCAGTGGAAGTGAAAGTGGCATTCAGACACAAAAGTGTGCCAAA
EST: TTAAGAACCTATGTGCAGCATGTGTGTGAGACGGTGCCACAGC TCCAGTGGCAGTGGAAGTGAAAGTGGCATTCAGACACAAAAGTGTGCCAAAEST: gi|88978654|gb|CI384995.1|CI384995
genomic: TTAAGAACCTATG-GCAGCATGTGTG-GAGACGGTGCCACAGCgtaagttgtt ... tcaaattcagTCCAGTGGCAGTGGAAGTGAAAGTGGCATTCAGACACAAAAGTGTGCCAAA
EST: AGAATGAACTTAAGAACCTATGGCAGCATGTTTGGAGACGGTGCCACAGC TCCAGTGGCAGTGGAAGTGAAAGTGGCATTCAGACACAAAAGTGTGCCAAA
genomic: AGAATGAACTTAAGAACCTATGGCAGCATGTGTGGAGACGGTGCCACAGCgtaagttgtt ... tcaaattcagTCCAGTGGCAGTGGAAGTGAAAGTGGCATTCAGACACAAAAGTGTGCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGTGTTTGTCAAAGGGCGCTGTTGACTTCTTAGTCAAGCCCATACGTAAGAATGAACTTAAGAACCTATGGCAGCATGTGTGGAGACGGTGCCACAGCgtaagttgttgttggtccagtttttcttatatattagatgttcaggcaaatccatcaagtactgactgctgcttcaccattttatggttacaatatgtgatgactctaaactaaagttgttattttcaaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA