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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACGgtgagtaacaaattattctttctcttttagtttacgactactcatattttgtcgaagttttttcttttcatgttcgtcgtcacttatttttgtcttcctctgttgctgcag

Basic information

species Oryza sativa
transcript LOC_Os07g49270.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G134396_T02 (Zea mays), 5'ss of exon 5
CATCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACGgtgagtaacaaatta-ttctttctcttttagtttacgactactcatatttt---gtcgaagttttttcttttcatgttcgtcgtcacttatttttgtcttcctctgttgctgcag
|| ||||| |||||||||||||| || |||||||| ||||||||||||||  |||||||| |||  | |||  | |||||||||||      |    ||  ||   ||     |   ||  |||   ||     |    |||| |||||||     |||   | |||
CACCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATTgtgagtaataaaggaattccatatcttttagtttctatacatctctaccttcatgtgatgatgacttggtttagggtatactgattattatctttgtcta----tgtcattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678657|gb|CF306896.1|CF306896
EST:     TCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACG                         CTAAAGAAAGAATCTATCCTGTTGCTGATGCTACTACC
genomic: TCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACGgtgagtaaca ... gttgctgcagCTAAAGAAAGAATCTATCCTGTTGCTGATGCTACTACC
EST: gi|58609363|gb|CK037396.1|CK037396
EST:     TCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACG                         CTAAAGAAAGAATCTATCCTGTTGCTGATGCTACTACCTTTTTTACTGATA
genomic: TCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACGgtgagtaaca ... gttgctgcagCTAAAGAAAGAATCTATCCTGTTGCTGATGCTACTACCTTTTTTACTGATA