1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGATGCAGGAGGCAACTCCACGACAGAACCATACCTTGCTGCCCACCATCTCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAGgtaaaatagcagaatgacagttcagctcaaggctggatttacactatgcaatgcaaattatctcagttacttttgctatccctgtatctgagaatgtagtctgcaatgcatttcttccaattgaacag
species | Oryza sativa |
transcript | LOC_Os07g46280.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAG CTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAAEST: gi|29642035|gb|CB647042.1|CB647042
genomic: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAGgtaaaatagc ... aattgaacagCTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAA
EST: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAG CTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAAEST: gi|66922928|gb|CX109776.1|CX109776
genomic: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAGgtaaaatagc ... aattgaacagCTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAA
EST: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAG CTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAAEST: gi|29664412|gb|CB660687.1|CB660687
genomic: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAGgtaaaatagc ... aattgaacagCTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAA
EST: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAG CTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAA
genomic: TCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAGgtaaaatagc ... aattgaacagCTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCAGGAGGCAACTCCACGACAGAACCATACCTTGCTGCCCACCATCTCATCCTTTCTCATGCTGCCGCCGTCAAGCGATACCGCGAAAAGTATCAGgtaaaatagcagaatgacagttcagctcaaggctggatttacactatgcaatgcaaattatctcagttacttttgctatccctgtatctgagaatgtagtctgcaatgcatttcttccaattgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC