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CAGAAGTATTGATGCATTATCCTGGTATGAGTGGCCTGAACCTCTGAAAAACCGACATCTCAGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTCgtaagcatttcaaactataatattttcattgcgatgaattattacagaaacaaatgccagtggactcatctacttaacttgctatgcag
species | Oryza sativa |
transcript | LOC_Os07g43390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCGACATCTCAGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTC ATAGAGATATTTATGGGCTCAACAATTCTTAEST: gi|218479628|gb|FG945759.1|FG945759
genomic: ACCGACATCTCAGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTCgtaagcattt ... tgctatgcagATAGAGATATTTATGG-CTCAACAATTCTTA
EST: ACCGACATCTCGGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTC ATAGAGATATTTATGGCTCAACAATTCTTATTTCAAAGGCAGTGGCAGCGAEST: gi|27577080|gb|CA999774.1|CA999774
genomic: ACCGACATCTCAGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTCgtaagcattt ... tgctatgcagATAGAGATATTTATGGCTCAACAATTCTTATTTCAAAGGCAGTGGCAGCGA
EST: ACCGACATCTCAGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTC ATAGAGATATTTATGGCTCAACAATTCTTATTTCAAAGGCAGTGGCAGCGA
genomic: ACCGACATCTCAGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTCgtaagcattt ... tgctatgcagATAGAGATATTTATGGCTCAACAATTCTTATTTCAAAGGCAGTGGCAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAAGTATTGATGCATTATCCTGGTATGAGTGGCCTGAACCTCTGAAAAACCGACATCTCAGGGCCTTGGAAGACATATATCAAAAACAGAAGGATTTCgtaagcatttcaaactataatattttcattgcgatgaattattacagaaacaaatgccagtggactcatctacttaacttgctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA