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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCAAATCTTAGCCTGTATGGCATTGCTTTGTTGATATTTAGTCTACGTCAGTCAGTGAGCGTGATAGTTCAGgtactctcttgttttaagataatattttactatttgcctgatcttttggatttatcttaaattttggaatcctatttcag

Basic information

species Oryza sativa
transcript LOC_Os07g39010.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g39010.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G121458_T02 (Zea mays), 5'ss of exon 10
ATCGCAAATCTTAGCCTGTATGGCATTGCTTTGTTGATATTTAGTCTACGTCAGTCAGTGAGCGTGATAGTTCAGgtactctcttgttttaagataa-tattttactatttgcctgatcttttggatttatcttaaattttggaatcctatttcag------------------
 | || |||||||||||||||||| |||||||| ||||||||| ||||   ||||||||||  ||  |||||||||||||||||||| ||||   |  | | || |||| |  ||||| || | |||||   || | ||||  |  | |    |||                  
GTTGCGAATCTTAGCCTGTATGGCGTTGCTTTGGTGATATTTACTCTATTGCAGTCAGTGAATGTACTAGTTCAGgtactctcttgtattaactaatctgtattgctatgtttctgatattcttgattttcatttatttttaaatacttcggccagtatcggtggattgcttag

upper sequence: LOC_Os07g39010.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G121458_T01 (Zea mays), 5'ss of exon 6
ATCGCAAATCTTAGCCTGTATGGCATTGCTTTGTTGATATTTAGTCTACGTCAGTCAGTGAGCGTGATAGTTCAGgtactctcttgttttaagataa-tattttactatttgcctgatcttttggatttatcttaaattttggaatcctatttcag
 | || |||||||||||||||||| |||||||| ||||||||| ||||   ||||||||||  ||  |||||||||||||||||||| ||||   |  | | || |||| |  ||||| || | |||||   || | ||||  |  | |    |||
GTTGCGAATCTTAGCCTGTATGGCGTTGCTTTGGTGATATTTACTCTATTGCAGTCAGTGAATGTACTAGTTCAGgtactctcttgtattaactaatctgtattgctatgtttctgatattcttgattttcatttatttttaaatacttcggccag

upper sequence: LOC_Os07g39010.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G060762_T01 (Zea mays), 5'ss of exon 6
ATCGCAAATCTTAGCCTGTATGGCATTGCTTTGTTGATATTTAGTCTACGTCAGTCAGTGAGCGTGATAGTTCAGgtactctcttgttttaag-ataatattttactatttgcctgatcttttggatttatcttaaattttggaatcctatt-tcag
 | |||||||||||||||||||||||||||||||||||||||| | ||   |||||||||| ||| ||  ||||||||||||||||| ||||  ||  | | || |||| |  || || || | ||||| | ||| |||||  ||| || |   |||
GTTGCAAATCTTAGCCTGTATGGCATTGCTTTGTTGATATTTACTATATTGCAGTCAGTGAACGTAATGTTTCAGgtactctcttgtattaactattttgtatttctatgtttctcatattgttgattt-tattatatttttaaatactttggccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29655796|gb|CB652071.1|CB652071
EST:     TTGCTTTGTTGATATTTAGTCTACGTCAGTCAGTGAGCGTGATAGTTCAG                         TATCGATGGATAGCATATGTGTCCATTGCCCTTGG
genomic: TTGCTTTGTTGATATTTAGTCTACGTCAGTCAGTGAGCGTGATAGTTCAGgtactctctt ... cctatttcagTATCGATGGATAGCATATGTGTCCATTGCCCTTGG