1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAACAAGTTCTTCTTGGCCATCTTGACTGGTCTCCAATGCACAAAGACCCAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttgtcctttattggatgggaaatattccaatcaatattttatggaacttcagtaagactattggagattctttatgcttgcccttgttccagg...
species | Oryza sativa |
transcript | LOC_Os07g36470.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAGTTTCTGGCGCGAGNACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|218491215|gb|FG953120.1|FG953120
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|86486918|gb|CI129551.1|CI129551
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: AACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATGATCGACACATCGGCCGACACGACTGCTEST: gi|86429795|gb|CI082218.1|CI082218
genomic: AACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: AAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|33804925|gb|CF328340.1|CF328340
genomic: AAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|86522340|gb|CI162546.1|CI162546
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: TAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|88998146|gb|CI038031.1|CI038031
genomic: TAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: TGAAGAAAATGATGTCCAG ATTGTACGTGTGCTTTATGACAATCATCGACACATCGGCCGACACGACTGCEST: gi|89167740|gb|CI021439.1|CI021439
genomic: TGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGC-TTATGACAATCATCGACACATCGGCCGACACGACTGC
EST: TTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|89174516|gb|CI110714.1|CI110714
genomic: TTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|33654619|gb|CF277233.1|CF277233
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CGAGAACATTAATAA-TTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|3761241|gb|C98489.1|C98489
genomic: CGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: AAGTTTCTGGCGCGAGCCCATTAATAATTTTGAAGAAAATGATTTNCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCEST: gi|38483054|gb|CF966856.1|CF966856
genomic: AAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTT-CCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGC
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCEST: gi|29688877|gb|CB685152.1|CB685152
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATC
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|88225670|gb|CI225586.1|CI225586
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|58679771|gb|CK068458.1|CK068458
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|58684033|gb|CK072720.1|CK072720
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|11442551|gb|BF430454.1|BF430454
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATTGGCCGACACGACTGCTEST: gi|88845531|gb|CI084456.1|CI084456
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: AATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|88250300|gb|CI348530.1|CI348530
genomic: AATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCEST: gi|8856617|gb|AU093935.1|AU093935
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGT-GTGCTTATGACAATCATCGACACATCGGCCGACACGACTGC
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTAAGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|88834129|gb|CI000493.1|CI000493
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|88964579|gb|CI069927.1|CI069927
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|33663504|gb|CF294471.1|CF294471
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: GAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|3764148|gb|AU030648.1|AU030648
genomic: GAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|86870697|gb|CI323573.1|CI323573
genomic: CAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: TTGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTEST: gi|86908059|gb|CI298812.1|CI298812
genomic: TTGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
EST: TGAAGAAAATGATTTCCAG ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
genomic: TGAAGAAAATGATTTCCAGgtatgctttg ... atttttgcagATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACAAGTTCTTCTTGGCCATCTTGACTGGTCTCCAATGCACAAAGACCCAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAGgtatgctttgtcctttattggatgggaaatattccaatcaatattttatggaacttcagtaagactattggagattctttatgcttgcccttgttccagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatggg