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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGATAATACAATAGACTTTATTGGCCATGCAGTGGCTCTTCATAAAGAGGATAACTACCTGACAGAACCTGCAATTGACACTGTAAAGCGGATGAAGgcaagtattgagtctttcaacttcaaaatattagaaaagaagctcggatcaaactagtcctgacagtctgatgaaattccacatcacactttggcgtaca...

Basic information

species Oryza sativa
transcript LOC_Os07g16970.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g16970.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G047431_T01 (Zea mays), 5'ss of exon 6
GGATGATAATACAATAGACTTTATTGGCCATGCAGTGGCTCTTCATAAAGAGGATAACTACCTGACAGAACCTGCAATTGACACTGTAAAGCGGATGAAGgcaagtattgagtctttcaacttcaaaatattagaaaagaagctcggatcaaactagtcctgacagtctgatgaaattccacatcacactttggcgtaca-
|||||||||||| |||||||| ||||| ||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| || |   |   |   | |||||||   || | ||  ||  |     || ||  |     | |    | |  |  | ||| |    |  ||    
GGATGATAATACGATAGACTTCATTGGGCATGCAGTGGCTCTTCATAGAGATGATAGCTACTTGACAGAACCTGCAATTGACACTGTAAAACGGATGAAGgcaagtctttatagtgatatactaaaaatatcccaacacaa-ttcaaaggtttcttgtaatttttatattgaaagaaacagcttcaaatgcagttgttttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29616692|gb|CB621704.1|CB621704
EST:     AGGATAACTACCTGACAGAACCTGCAATTGACACTGTAAAGCGGATGAAG                         CTTTATGCAGAATCAGTGGGTCGTTTTCA-GGAGGATCACCATATATTTAT
genomic: AGGATAACTACCTGACAGAACCTGCAATTGACACTGTAAAGCGGATGAAGgcaagtattg ... attattgcagCTTTATGCAGAATCAGTGGGTCGTTTTCAAGGAGGATCACCATATATTTAT
EST: gi|58655667|gb|CK044347.1|CK044347
EST:     AGGATAACTACCTGACAGAAACTGCAATTGACACTGTAAAGCGGATGAAG                         CTTTATGCAGAATCAGTGGGTC
genomic: AGGATAACTACCTGACAGAACCTGCAATTGACACTGTAAAGCGGATGAAGgcaagtattg ... attattgcagCTTTATGCAGAATCAGTGGGTC