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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAGgttcagttagtagtactttgctcttctcagtttgatatgtgcttgctattcctatacttctctcactttcatctactcttcaacttgtag

Basic information

species Oryza sativa
transcript LOC_Os07g13170.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g13170.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G176175_T01 (Zea mays), 5'ss of exon 6
GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAGgttcagttagtagtactttgctcttctc---agtttgatatgtgct------tgctatt--cctatact-tctctcactttcatctactcttcaact-tgtag
||||||||| || ||  | |||||||||||||| || || ||||||||||||||| |||| | ||| |||||    | |||    | |  |      |||||    | || ||| || | |||||| ||||  |  |  | | |||||
GTACATCTACCTTGGTCTATTTGACAGTGAAATCGAAGCAGCAAGgttcagttagcagtattgtgcacttcttttaaatttttcgtatattcatggatgctaacaacttaaactctcacgcactttgatctctttgttgattctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88741773|gb|CI765281.1|CI765281
EST:     GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAG                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA
genomic: GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAGgttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA
EST: gi|29677592|gb|CB673867.1|CB673867
EST:     CA                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
genomic: --gttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
EST: gi|29677592|gb|CB673867.1|CB673867
EST:     CA                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
genomic: --gttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
EST: gi|29677592|gb|CB673867.1|CB673867
EST:     CA                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
genomic: --gttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
EST: gi|29677592|gb|CB673867.1|CB673867
EST:     CA                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
genomic: --gttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
EST: gi|29677592|gb|CB673867.1|CB673867
EST:     CA                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
genomic: --gttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTA
EST: gi|58673756|gb|CK062442.1|CK062442
EST:     GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAG                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA
genomic: GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAGgttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA
EST: gi|157651263|gb|EX450897.1|EX450897
EST:     GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAG                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA
genomic: GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAGgttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA
EST: gi|58587235|gb|CF985543.1|CF985543
EST:     GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAG                         AGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA
genomic: GTACATCTATCTAGGATTGTTTGACAGTGAAATTGAGGCTGCAAGgttcagttag ... caacttgtagAGCATATGACCGGGCAGCTATCCGCTTCAATGGAAGGGAAGCTGTTACTAA