1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTATCTTGATGGACTTGCAGATGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattctgtctgtggcctgcaaattaaatgttcttgtacattcctcgaattgtttcttcctcagtaaactttcattgaaataatagtttctatgatgacttcattcaag
species | Oryza sativa |
transcript | LOC_Os07g04990.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACCGCCTTCGGGATGCAEST: gi|88368695|gb|CI675516.1|CI675516
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAAC-GCCTTCGGGATGCA
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|313083769|gb|HO213899.1|HO213899
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|95101321|gb|CI693066.1|CI693066
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|58586534|gb|CF984842.1|CF984842
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|58605103|gb|CK033136.1|CK033136
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|58592358|gb|CF990666.1|CF990666
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|29686352|gb|CB682627.1|CB682627
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|29684749|gb|CB681024.1|CB681024
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|313080415|gb|HO213423.1|HO213423
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|29685611|gb|CB681886.1|CB681886
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|29685612|gb|CB681887.1|CB681887
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|38483088|gb|CF966890.1|CF966890
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCACEST: gi|58589665|gb|CF987973.1|CF987973
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGACGAAAAGAGGAGTTCCACEST: gi|38480259|gb|CF964348.1|CF964348
genomic: TGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
EST: GCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCCTCAAACTACAATG AGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
genomic: GCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTC-TCAAACTACAATGgtctgtattc ... ttcattcaagAGAAACGCCTTCGGGATGCATATGCGCGGATGAAGAAAAGAGGAGTTCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTATCTTGATGGACTTGCAGATGCCTATGAGCAAGGCCTTGTAAAGGCTGTTGGAGTCTCAAACTACAATGgtctgtattctgtctgtggcctgcaaattaaatgttcttgtacattcctcgaattgtttcttcctcagtaaactttcattgaaataatagtttctatgatgacttcattcaag
- - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG