1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatggctatacatagttttgtttttttttacctttaccatcttattctgacatagtttcaccttcttttgctattaccaatttattatgatgggtcatatttccag
species | Oryza sativa |
transcript | LOC_Os07g01030.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAG CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCEST: gi|29613025|gb|CB618038.1|CB618038
genomic: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatgg ... atatttccagCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATC
EST: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAG CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCEST: gi|29657825|gb|CB654100.1|CB654100
genomic: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatgg ... atatttccagCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATC
EST: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAG CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCEST: gi|29621512|gb|CB626523.1|CB626523
genomic: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatgg ... atatttccagCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATC
EST: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAG CCAATAAGATACGCCTTTGGAACAAGGGTGCTGATTCAGAAAGCTTCCATCEST: gi|29669005|gb|CB665280.1|CB665280
genomic: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatgg ... atatttccagCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATC
EST: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAG CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCEST: gi|86848294|gb|CI292130.1|CI292130
genomic: ACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatgg ... atatttccagCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATC
EST: CCATCAAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAG CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATC
genomic: CCATC-AGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatgg ... atatttccagCCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTTGCTATCGGCAAGGATCTTCAAGCTGCCCGTGTTACAGCAGgttgtcatggctatacatagttttgtttttttttacctttaccatcttattctgacatagtttcaccttcttttgctattaccaatttattatgatgggtcatatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC