Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTATCCTTTGCATTCCCTATCCCCAGTCAATATACAAATTTGTTTACCAATGGGGAAGgtacactgctgccaagttgccacatttaattattcaagcatcaatattcagttgtcctatatacttatattttctcagaatctcagctcagctccctaattgttatggcag

Basic information

species Oryza sativa
transcript LOC_Os06g49990.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49990.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 6
GGGTTATCCTTTGCATTCCCTATCCCCAGTCAATATACAAATTTGTTTACCAATGGGGAAGgtacactgctgccaagttgccacatttaattattcaagcatcaatattcagttgtcctatatacttatattttctcagaatctcagctcagctccctaattgttatggcag
|| |||||||| ||||||||||| ||||| || ||||||||| | || || ||||| |||||||  |  ||   | |       ||| | || |  |    | ||| |||  ||        |||  |||||| |  |  || | | |||   ||  |||||| ||||||||
GGTTTATCCTTCGCATTCCCTATTCCCAGCCAGTATACAAATCTATTCACTAATGGAGAAGgtattcaccttataggca-----attcagttgtg-atttgtgaatgttctattac------tacccatatttacgtaacattttacctcgcttctgtaattgctatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11442702|gb|BF430605.1|BF430605
EST:     TGCATTCCCTATCCCCAGTCAATATACAAATTTGTTTACCAATGGGGAAG                         TGGCAGATTTGCCTCTGGAATTTCCTGACGGAACAACTCCTGTTACTTGCC
genomic: TGCATTCCCTATCCCCAGTCAATATACAAATTTGTTTACCAATGGGGAAGgtacactgct ... gttatggcagTGGCAGATTTGCCTCTGGAATTTCCTGACGGAACAACTCCTGTTACTTGCC
EST: gi|33675671|gb|CF303910.1|CF303910
EST:     GCATTCCCTATCCCCAGTCAATATACAAATTTGTTTACCAATGGGGGAAG                         TGGCAGATTTGCCTCTGGAATTTCCTGACGGAACAACTCCTGTTACTTGC
genomic: GCATTCCCTATCCCCAGTCAATATACAAATTTGTTTACCAATGGGG-AAGgtacactgct ... gttatggcagTGGCAGATTTGCCTCTGGAATTTCCTGACGGAACAACTCCTGTTACTTGC