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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaagtggccttcatgtgtgggctctgttatctcactgtcgggcattaacagggtttgtctgatttgctactgttggcag

Basic information

species Oryza sativa
transcript LOC_Os06g49890.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49890.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G116427_T01 (Zea mays), 5'ss of exon 6
GCGCATCCGTGATGAACTCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaa-agtggccttcatgtgtgggctc-tgttatct-cactgtcgggcattaacagggtttgtctgatttgctactgttggcag-------
|||||| |||||||| || |||||||||||||||||||| || || || ||||||||||| ||||||||||||   |||   ||      |   || | || | ||       |||   |  | ||| |     |  |  || |  ||  |||         
GCGCATACGTGATGAGCTTGCCAAGCAGAATGAGGAAACCACTGAGCTTACCACAAAGCTTGACAAGgtgagtggtagtaaactaaggccgcatgcccatgctttccgtgtcatcgtttac-atcagagaccaaccaaaatgtt-ttgccggccatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88503130|gb|CI430636.1|CI430636
EST:     TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG                         GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
EST: gi|86825688|gb|CI361828.1|CI361828
EST:     TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG                         GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
EST: gi|88476993|gb|CI414264.1|CI414264
EST:     TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG                         GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
EST: gi|44665000|gb|CR278434.1|CR278434
EST:     TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAG                         GAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC
genomic: TCGCCAAGCAGAATGAGGAAACTACAGAACTCACCACAAAGCTAGACAAGgtgagtaaag ... ctgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATC