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TGAGAGTTTGAGAATGATCTCTGATACTGTACCCTTAGCACCAAGGATGTTAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtgaactttgtaaaccattccatttattgtagtgattatgatgtgatatattctggttttccttacttgtggatctttacttggaaaaacagta...
species | Oryza sativa |
transcript | LOC_Os06g47350.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCT AAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATGEST: gi|29656148|gb|CB652423.1|CB652423
genomic: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtga ... tctaatgcagAAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATG
EST: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCT AAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATGEST: gi|29636778|gb|CB641787.1|CB641787
genomic: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtga ... tctaatgcagAAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATG
EST: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCT AAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATGEST: gi|29689750|gb|CB686025.1|CB686025
genomic: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtga ... tctaatgcagAAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATG
EST: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCT AAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATGEST: gi|29624118|gb|CB629129.1|CB629129
genomic: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtga ... tctaatgcagAAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATG
EST: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCT AAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATANGATGEST: gi|29685786|gb|CB682061.1|CB682061
genomic: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtga ... tctaatgcagAAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATG
EST: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCT AAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATEST: gi|29639208|gb|CB644217.1|CB644217
genomic: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtga ... tctaatgcagAAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGAT
EST: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCT AAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATG
genomic: TAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtga ... tctaatgcagAAGATGGTTTCGTTTGTTGAGTGCATGTTGGGTCTTGATAATGATAGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAGTTTGAGAATGATCTCTGATACTGTACCCTTAGCACCAAGGATGTTAAAGGATATAATAGATAGGAGTATGCCGAAGTTATTTGACAACAAAGCTgtaagtgtgaactttgtaaaccattccatttattgtagtgattatgatgtgatatattctggttttccttacttgtggatctttacttggaaaaacagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca