1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTgtaagttaacaagacagttcccttttttacaagttattatcttgtgttattgctagcgatcttctgcaatctgcagatccctgatgatgttaatctttttatgtgtctttgtgttgcctaactgcctcacag
species | Oryza sativa |
transcript | LOC_Os06g45120.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT ACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGTEST: gi|29656411|gb|CB652686.1|CB652686
genomic: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTgtaagttaac ... tgcctcacagACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGT
EST: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT ACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGTEST: gi|29620942|gb|CB625953.1|CB625953
genomic: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTgtaagttaac ... tgcctcacagACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGT
EST: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT ACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGAEST: gi|88256210|gb|CI358598.1|CI358598
genomic: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTgtaagttaac ... tgcctcacagACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGT
EST: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCT ACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGT
genomic: GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTgtaagttaac ... tgcctcacagACTGTGTTTGAGAATACGCTGATGAAACATCATGTTGCCCTTCCTCCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGGAGATGCCATCACTGGTGGAGATCTATATGCTgtaagttaacaagacagttcccttttttacaagttattatcttgtgttattgctagcgatcttctgcaatctgcagatccctgatgatgttaatctttttatgtgtctttgtgttgcctaactgcctcacag
- TTGGAG
- - TGGAGA
- - GGAGAT
- - - GAGATG
- - - - - - - - - TGGTGG
- - - - - - - - - - GGTGGA
- - - - - - - - - - GTGGAG
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - GGAGAT
- - - - - - - - - - - - GAGATC