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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcatttgtttgtttgtatgatcacatttagcccgtgtaacattctttatgggataacatcatgggctatagcaatttcgcatttctgtttggatct...

Basic information

species Oryza sativa
transcript LOC_Os06g43570.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 5
GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcatttgtttgtttgt-atgatcacatttagcccgtgta-acattctttatgggataacatca--tgggctatagcaatttcgcatttctgtt-tggatct-------------------------------------------------------
||| || || |||||||| |||||||| ||||||||||| || ||| | |||||||||||||||||||||||||| || ||||||||||||  ||   ||  |||  ||| |  ||||  |     |  || ||  || ||||    | ||      | | ||  || |||  ||||  | | |  ||                                                         
GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATGgtatgcgcttcgatgcatgttgtgaacctatttccctgagatccacttttgttttgggtctgcgtctaccatgttttatgaagttctaatttggggtgtacattactgtactttgttctattcttagtcaaatgacatcttgttatttttcatgacatag

upper sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 5
GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcatttgtttgtttg-tatgatcacatttagcccgtgta-acattctttatgggataacat-----catgggctatagc--aatttcgcatttctgtt--tggatct--------------------------------------------------
||| || || |||||||| ||||| || || |||||||| || ||| | |||||||||||||| ||||||||||| ||  |||||||||||  ||   ||  || | |   |  ||||        |  || ||  || ||||    | |     ||||   |||     | ||| | || |   ||  || |  |                                                  
GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTATGGTGCTTGTGAATCCATGTACAAGCCGGACATGgtatgcgcttcgatgcatgctgtcgacctatttccttgagatccacttttgttttgggtctgcgtatacccatgttttatgatctatttttggatgtacattattgtagtttgttctgtttttagttgaatgacatcatcttgttatttttcatggcatag

upper sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 3
GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcatttgtttgtttgtatgatcacatttagcccgtgtaacattctttatgggat--aacatcatgggctatagcaatttcgcatttctgtt---tggatct-
|||||| || || ||||| |  ||  | || || ||||| |||||||| ||||||||||||||||| ||||  || ||  ||||||| ||  | |     ||    |  |  | ||||     ||| || || ||||     |  ||  || ||   |    | || |    ||| ||||   ||  | | 
GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttg--tctcgaaattcaatttgttgcctttaa----tgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtttgtgttgcttgagtttt

upper sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 3
GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcatttgtttgtttgtatgatcacatttagcccgtgtaacattctttatgggataacatcatgggctatagcaatttcgcatttctgtttggatct----
|||||| || || ||||| || ||  | || || ||||| |||||||| ||||||||||||||||| ||||  || ||  ||||||| ||  | |     ||    |  |  | |||      ||     || ||| | | ||      |    ||  ||  || ||    || |||||| ||      
GGAACTTGCAAAAGATTTTGTAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttg--tctcgaaattcaatttgttgcctttgatgt-tgcttttttttttttagaatt-tgcaaattcctgcagttatatctatattttgtttgtattgcttg

upper sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G10130.1 (Glycine max), 5'ss of exon 4
GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatg---catttgtttgtttgtatgatc--acatttagccc-gtgtaacattctttatgggataacatcatgggctatagcaatttcgcatttctgtttggatct
||| || || || ||||| ||||| || ||||| ||||| |||||||| ||||||||||||||| | ||||  || ||  |||||||  |   ||     |   |||| |  ||  | |||| |    ||| | ||   |    | |     |||||    |     ||| | |    | | ||   ||  
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtcccaaagactaacttgttttgtcttatatttggttttgtgaatcaacatagtcgtgtgtgtatcatacttt----taatatggatagtttcttgcaat--

upper sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcatttgtttgtttgtatgatcacat-ttagcccgtgtaacattctt-tatgggataa-catcatgggctatagcaatttcgcatttctgtttggatct
|||  ||||||| ||||| ||||| ||||| || || || || |||||||||||||| |||||  |||||| ||||||| | ||||||||    | | ||      || |    |       |     | | ||   | || | | | || |      | | | |   ||     | |||  | ||  
GGAGTTAGCTAAAGATTTTGTTGTCTCGGGAACTGCTTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACCAGATATGgtatgtgcct-tctgaaaacttgtttttgtaccgattcactggatactcaaatgtgtgtttatcacctgaaaatttggtaggatcattcatatgtaagtat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88548233|gb|CI476587.1|CI476587
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88488763|gb|CI426034.1|CI426034
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCCAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88418328|gb|CI548609.1|CI548609
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|86866304|gb|CI336928.1|CI336928
EST:     CATCCGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|86869859|gb|CI316587.1|CI316587
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACAT-                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|27578275|gb|CB000970.1|CB000970
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|86887201|gb|CI326016.1|CI326016
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88428109|gb|CI557003.1|CI557003
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88507635|gb|CI435141.1|CI435141
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|33658927|gb|CF281540.1|CF281540
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|33663267|gb|CF294234.1|CF294234
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88270346|gb|CI385604.1|CI385604
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACAT-                         GAACCTGAA-AACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|55432675|gb|CV729358.1|CV729358
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88519731|gb|CI447385.1|CI447385
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|218483130|gb|FG953131.1|FG953131
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88535745|gb|CI465448.1|CI465448
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|55413998|gb|CV726374.1|CV726374
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88553613|gb|CI483736.1|CI483736
EST:     GTGCTTGTGAGTCCATGTACAAACCCAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: GTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88462423|gb|CI514555.1|CI514555
EST:     TATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: TATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|55413602|gb|CV725978.1|CV725978
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|33684761|gb|CF313000.1|CF313000
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88510953|gb|CI438459.1|CI438459
EST:     CATCGGAGTCTTTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATTTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88439058|gb|CI551909.1|CI551909
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88303909|gb|CI512983.1|CI512983
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88960027|gb|CI381905.1|CI381905
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88503638|gb|CI431144.1|CI431144
EST:     AGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: AGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88380069|gb|CI513659.1|CI513659
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88504347|gb|CI431853.1|CI431853
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|33660368|gb|CF291335.1|CF291335
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|29666365|gb|CB662640.1|CB662640
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88486810|gb|CI424081.1|CI424081
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|25806911|gb|CA762872.1|CA762872
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAGGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|58683923|gb|CK072610.1|CK072610
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|86420774|gb|CI056763.1|CI056763
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88548646|gb|CI476461.1|CI476461
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88835147|gb|CI370450.1|CI370450
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88381068|gb|CI523639.1|CI523639
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|33660483|gb|CF291450.1|CF291450
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88289950|gb|CI547587.1|CI547587
EST:     GTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: GTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|88295297|gb|CI525450.1|CI525450
EST:     TATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: TATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
EST: gi|33681923|gb|CF310162.1|CF310162
EST:     CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATG                         GAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT
genomic: CATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 71 (downstream exon)
Score: 7

GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcattt ... cttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT




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