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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatgaatcatctagcaaactgttcaagacaaatcaaaagcgtagatggatcaagcagtgagctagtggtctaagactgaaactgaaaatattttgtctgaaaatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os06g36560.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G126900_T02 (Zea mays), 5'ss of exon 5
GTGACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatgaatcatctagcaaactgttcaagacaaatcaaaagcgtagatggatcaagcagtgagctagtggtctaagactgaaactgaaaatattttgtctgaaaatgtgcag
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||   |   | |    | |||  ||     ||     ||       |  ||       ||  ||  ||     | |    | |                                
GTGACACCTTCCCCGTCGGCTGCGCATACGACGAGTGCAACGTCCACTTCAAGgtagtaagcaattgcagttgcaggcttcagtagtgtgctctcctctcttcatcttcaccgccctgccctgactctgttgcgcag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89185423|gb|CI051751.1|CI051751
EST:     CGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAAGCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: CGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29644701|gb|CB649708.1|CB649708
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29679307|gb|CB675582.1|CB675582
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29660840|gb|CB657115.1|CB657115
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGTTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|58587863|gb|CF986171.1|CF986171
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAGGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29661872|gb|CB658147.1|CB658147
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29656267|gb|CB652542.1|CB652542
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29676120|gb|CB672395.1|CB672395
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|88209081|gb|CI208930.1|CI208930
EST:     GCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: GCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|87036499|gb|CI191121.1|CI191121
EST:     GCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: GCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29656245|gb|CB652520.1|CB652520
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|86504862|gb|CI147495.1|CI147495
EST:     GCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: GCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|88967586|gb|CI016101.1|CI016101
EST:     AATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCGGAACCCAAAGCTCAACACCAAGTTT
genomic: AATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|88971449|gb|CI017763.1|CI017763
EST:     CGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCCAAGTT
genomic: CGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACA-CCAAGTT
EST: gi|29680345|gb|CB676620.1|CB676620
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29657369|gb|CB653644.1|CB653644
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|94363057|gb|CI053218.1|CI053218
EST:     ATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|86254518|gb|CI059245.1|CI059245
EST:     TCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: TCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29642558|gb|CB647565.1|CB647565
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29669886|gb|CB666161.1|CB666161
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29639892|gb|CB644901.1|CB644901
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|87031847|gb|CI272548.1|CI272548
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|66920340|gb|CX107188.1|CX107188
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29658930|gb|CB655205.1|CB655205
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|87028058|gb|CI257218.1|CI257218
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|87009635|gb|CI309156.1|CI309156
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCCAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|29659887|gb|CB656162.1|CB656162
EST:     ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: ACACCTTCCCCGTCGGCTGCGCATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
EST: gi|89188526|gb|CI115775.1|CI115775
EST:     CATTCGACGAATGCAACGTCCACTTCAAG                         TACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT
genomic: CATTCGACGAATGCAACGTCCACTTCAAGgtaaccaatg ... aaatgtgcagTACTTCAAGGAGAACCCTGACTACCTGAACCCAAAGCTCAACACCAAGTTT