1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGTCTGGTTCCCCCAGCCAGCACCAAAGGATCACCCATGGCGATACATGCCCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAGgtcagcttctatgtttcctactctctctatttaaaaaaaaacttaaatcctaaaaatgaatctgtatctagatttatcatttggatttaattccttttgg...
species | Oryza sativa |
transcript | LOC_Os06g29220.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAG CTGAGATACGCGGCGGGGGTAAAGGACATGCTGGACAGGTATTTCAAAGGGEST: gi|86544470|gb|CI184676.1|CI184676
genomic: CCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAGgtcagcttct ... tttcgtgtagCTGAGATACGCGGCGGGGGTAAAGGACATGCTGGACAGGTATTTCAAAGGG
EST: CCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAG CTGAGATACGCGGCGGGGGTAAAGGACATGCTGGACAGGTATTTCAAAGGGEST: gi|88471305|gb|CI408576.1|CI408576
genomic: CCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAGgtcagcttct ... tttcgtgtagCTGAGATACGCGGCGGGGGTAAAGGACATGCTGGACAGGTATTTCAAAGGG
EST: CCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAG CTGAGATACGCGGCGGGGGTAAAGGACATGCTGGACAGGTATTTCAAAGGG
genomic: CCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAGgtcagcttct ... tttcgtgtagCTGAGATACGCGGCGGGGGTAAAGGACATGCTGGACAGGTATTTCAAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCTGGTTCCCCCAGCCAGCACCAAAGGATCACCCATGGCGATACATGCCCAATCATGCTATGACCCCTCACTGCTCTGGGACTACAATTGATGGACAGgtcagcttctatgtttcctactctctctatttaaaaaaaaacttaaatcctaaaaatgaatctgtatctagatttatcatttggatttaattccttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa