1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAAGAAAGGAGCATGTTTGATCATGTCACCTGCAACAGATCAGCCTCTGTAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaaacagtaaatcttttttggtgcaattactgtctgacactaatccttccactgcatttgactttctgtttccaaattgttcag
species | Oryza sativa |
transcript | LOC_Os06g20370.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGEST: gi|88451089|gb|CI534082.1|CI534082
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
EST: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGEST: gi|58673199|gb|CK061885.1|CK061885
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
EST: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGEST: gi|88286796|gb|CI520106.1|CI520106
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
EST: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGEST: gi|58595567|gb|CK006095.1|CK006095
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
EST: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGEST: gi|58668066|gb|CK056752.1|CK056752
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
EST: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAEST: gi|44677506|gb|CR290940.1|CR290940
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAG-AGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAA
EST: TAGACAAGGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAGEST: gi|218497048|gb|FG946045.1|FG946045
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
EST: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAA GCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
genomic: TAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaa ... aattgttcagGCTGAGGTAGAGGTTCAAAGGCTAGACCAGCTAAAATACAGCAAGATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGAAAGGAGCATGTTTGATCATGTCACCTGCAACAGATCAGCCTCTGTAGACAAAGTCACTGCACCTGGAGCTCTTGCCCTGGATCTCATTGAGCAAgtgagattaaacagtaaatcttttttggtgcaattactgtctgacactaatccttccactgcatttgactttctgtttccaaattgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT