1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTAGGTGATCTGGTGGTACTAGATATATTTGCAGAAAGTATTACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAGgtttgtcaattattcacacacatgttttataagattttccaaaacttcactttttggtgcattatgactagtcagcaaagtgatatgctaatgctatatg...
species | Oryza sativa |
transcript | LOC_Os06g20320.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAG GTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTGEST: gi|27577340|gb|CB000035.1|CB000035
genomic: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAGgtttgtcaat ... tgatttacagGTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTG
EST: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAG GTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTGEST: gi|29664068|gb|CB660343.1|CB660343
genomic: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAGgtttgtcaat ... tgatttacagGTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTG
EST: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAG GTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTGEST: gi|29686017|gb|CB682292.1|CB682292
genomic: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAGgtttgtcaat ... tgatttacagGTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTG
EST: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAG GTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTG
genomic: TACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAGgtttgtcaat ... tgatttacagGTTTCCACTTGGACACTGAGGAAAACAATAACCTTGTTCCTGGTTTTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGGTGATCTGGTGGTACTAGATATATTTGCAGAAAGTATTACCAGTGATGGCTCTAAAGGTGAAAAAATTCCATCAGCTGAGAGTAAAGgtttgtcaattattcacacacatgttttataagattttccaaaacttcactttttggtgcattatgactagtcagcaaagtgatatgctaatgctatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA