1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTCGCATACTCCAACTATCTCAGCCACGCCAACGTCCGCGTCCCCTGCGGCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAGgtaaagggaaaaaaaattctagctgcgaccaggatttaccaaaccgttttcaatcgatttgaatagagttatcgtcactctacgttttagcggttagcac...
species | Oryza sativa |
transcript | LOC_Os06g14540.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAG GTGGACTACATCCTGGGCGACAACCCGCTGCGGATGTCGTACATGGTGGGTEST: gi|58673930|gb|CK062616.1|CK062616
genomic: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAGgtaaagggaa ... ttgggtgcagGTGGACTACATCCTGGGCGACAACCCGCTGCGGATGTCGTACATGGTGGGT
EST: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAG GTGGACTACATCCTGGGCGACAACCCGCTGCGGATGTCGTACATGGTGGGTEST: gi|58656381|gb|CK045061.1|CK045061
genomic: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAGgtaaagggaa ... ttgggtgcagGTGGACTACATCCTGGGCGACAACCCGCTGCGGATGTCGTACATGGTGGGT
EST: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAG GTGGACTACATCCTGGGCGACEST: gi|58685941|gb|CK074628.1|CK074628
genomic: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAGgtaaagggaa ... ttgggtgcagGTGGACTACATCCTGGGCGAC
EST: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAG GTGGACTACATCCTGGGCGACAACCCGCTGCGGATGTCGTACATGGTGGGT
genomic: GCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAGgtaaagggaa ... ttgggtgcagGTGGACTACATCCTGGGCGACAACCCGCTGCGGATGTCGTACATGGTGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGCATACTCCAACTATCTCAGCCACGCCAACGTCCGCGTCCCCTGCGGCACCTCCTCCGCCTCCCCCGTCCAGCTCCGACGCGTCGCCAAGCGCCAGgtaaagggaaaaaaaattctagctgcgaccaggatttaccaaaccgttttcaatcgatttgaatagagttatcgtcactctacgttttagcggttagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa