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GAACATGAAAACTCGTGTCATTGGTTGCCCAAAGACTATTGATGGAGATCTGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggttcttgatccttgtgcatcagttttcaaaatttcagctaattctactgtagattgtgaagttttcacccttatgaccttgatgcacttgctc...
species | Oryza sativa |
transcript | LOC_Os06g13810.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAAATGCAAGGAGGTTCCA-CACGCTTTGGGTTTGACACTGCTTGCAAG ATATACTCTGAAATGATEST: gi|29689204|gb|CB685479.1|CB685479
genomic: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggtt ... tctttttcagATATACTCTGAAATGAT
EST: CAACAAGCTTTGGGTTTGACACTGCTTGCAAG ATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGGEST: gi|218497540|gb|FG953486.1|FG953486
genomic: CAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggtt ... tctttttcagATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGG
EST: TGAAATGCGAGGAGGTTCCAACAAGCTTTGGGTTAGACACTGCTTGCAAG ATATACTCTGAAATGATTGGTAATGTAATGACTGATGCACGCTCAEST: gi|58657805|gb|CK046485.1|CK046485
genomic: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggtt ... tctttttcagATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCA
EST: AATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAG ATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGGEST: gi|58675628|gb|CK064315.1|CK064315
genomic: AATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggtt ... tctttttcagATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGG
EST: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAG ATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGGEST: gi|33796706|gb|CF324221.1|CF324221
genomic: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggtt ... tctttttcagATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGG
EST: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAG ATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGGEST: gi|5003496|gb|AU068645.1|AU068645
genomic: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggtt ... tctttttcagATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGG
EST: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAG ATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGG
genomic: TGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggtt ... tctttttcagATATACTCTGAAATGATTGGTAATGTTATGACTGATGCACGCTCAACCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACATGAAAACTCGTGTCATTGGTTGCCCAAAGACTATTGATGGAGATCTGAAATGCAAGGAGGTTCCAACAAGCTTTGGGTTTGACACTGCTTGCAAGgtatcaggttcttgatccttgtgcatcagttttcaaaatttcagctaattctactgtagattgtgaagttttcacccttatgaccttgatgcacttgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT