1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGTGGACTTAAGGTGAATGCTGTTGACACCACTGGTGCTGGAGATGCCTTTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcacaacagaaataaacatgaatttccattcaatttgttttgttctctgtggcagtagaatgaggatgtatgaaatgattttcaactgaaaagg...
species | Oryza sativa |
transcript | LOC_Os06g12600.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCCCTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTTTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|88323622|gb|CI556253.1|CI556253
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: GTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|88527872|gb|CI456062.1|CI456062
genomic: GTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: ATACTATCCCAGGTATCTGTTGATTTTTCACTGGGGCAG GATGAAGGCCGATTGAAAGAAGCTGTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|87010155|gb|CI279252.1|CI279252
genomic: ATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|89186860|gb|CI053263.1|CI053263
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|88434903|gb|CI549100.1|CI549100
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|27545583|gb|CA763796.2|CA763796
genomic: TTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|88535866|gb|CI465579.1|CI465579
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TGTTGGT-GAATNACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTNTGGGGCTEST: gi|29632918|gb|CB637927.1|CB637927
genomic: TGTTGCTGGAAT-ACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|88526434|gb|CI453170.1|CI453170
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|88557168|gb|CI487553.1|CI487553
genomic: TGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|86859066|gb|CI276999.1|CI276999
genomic: TTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|88552488|gb|CI482499.1|CI482499
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGTTGGTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTEST: gi|29685991|gb|CB682266.1|CB682266
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
EST: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAG GATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
genomic: TTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcac ... gtttaaatagGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGACTTAAGGTGAATGCTGTTGACACCACTGGTGCTGGAGATGCCTTTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTTTTCACTGCTGCAGgtatgttcacaacagaaataaacatgaatttccattcaatttgttttgttctctgtggcagtagaatgaggatgtatgaaatgattttcaactgaaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa