1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGGATGTTTGATAATGACATCGAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTTgtatgcataactacttgtccttatatttttctgtaactcctttctttccaacctgagaactaatatgattgtcttgctag
species | Oryza sativa |
transcript | LOC_Os06g07130.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTT GAAAATGTATGGGATGAAACTTCAAGGACCTATTCCAGAAAATTTCTCTAAEST: gi|25799659|gb|CA755620.1|CA755620
genomic: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTTgtatgcataa ... gtcttgctagGAGAATGTATGGGATGAAACTTCAAGGACCTATTCCAGAAAATTTCTCTAA
EST: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTT GAGAATGTATGGGATGANACTTCAAGGACCTATTCCAGAANATTTCTCNTAEST: gi|29626580|gb|CB631591.1|CB631591
genomic: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTTgtatgcataa ... gtcttgctagGAGAATGTATGGGATGAAACTTCAAGGACCTATTCCAGAAAATTTCTC-TA
EST: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTT GAGAATGTATGGGATGAAACTTCAAGGACCTATTCCAGAAAATTTCTCTAAEST: gi|29679930|gb|CB676205.1|CB676205
genomic: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTTgtatgcataa ... gtcttgctagGAGAATGTATGGGATGAAACTTCAAGGACCTATTCCAGAAAATTTCTCTAA
EST: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTT GAGAATGTATGGGATGAAACTTCAAGGACCTATTCCAGAAAATTTCTCTAA
genomic: GAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTTgtatgcataa ... gtcttgctagGAGAATGTATGGGATGAAACTTCAAGGACCTATTCCAGAAAATTTCTCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATGTTTGATAATGACATCGAAGGAATGGTTCCAGGATTTATTGCGAACTTTGCCAATCTTACAGATTTgtatgcataactacttgtccttatatttttctgtaactcctttctttccaacctgagaactaatatgattgtcttgctag
- - - - - - - - - - - AAGGAA