1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAACAACAACTTCAAGATGCTAATAAAGACTTAAAAAGGAAGgtaatatatacagattagtatatatactccatatgtgataaaactccaaacgttaattatattactctctctccggagctgctagccttgagcatgagta...
species | Oryza sativa |
transcript | LOC_Os06g06750.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACAACAACTTCAAGATGCTAATAAAGACTTAAAAAGGAAG ATACAAGAAACTAGTGGAGAAAATATGCTTCATATATCTTGCCAAGATGTAEST: gi|86540381|gb|CI180587.1|CI180587
genomic: GAACAACAACTTCAAGATGCTAATAAAGACTTAAAAAGGAAGgtaatatata ... attgcaacagATACAAGAAACTAGTGGAGAAAATATGCTTCATATATCTTGCCAAGATGTA
EST: TAAAGACTTAAAAAGGAAG ATACAAGAAACTAGTGGAGAAAATATGCTTCATATATCTTGCCAAGATGTA
genomic: TAAAGACTTAAAAAGGAAGgtaatatata ... attgcaacagATACAAGAAACTAGTGGAGAAAATATGCTTCATATATCTTGCCAAGATGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACAACAACTTCAAGATGCTAATAAAGACTTAAAAAGGAAGgtaatatatacagattagtatatatactccatatgtgataaaactccaaacgttaattatattactctctctccggagctgctagccttgagcatgagta
- - - - - - AAGATG
- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctcc