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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttcacaatctcttatgcagtggatgttattcacaatatatggctttttatgaggtgatttgtgcactaatggttctaaaactgaaacaacag

Basic information

species Oryza sativa
transcript LOC_Os06g05180.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 5
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttc-acaatctcttatgcagtg-gatgttattcacaatatatggctttttatgaggtgatttgtgcactaatggttctaaaactgaaacaacag
|||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||  |  |  |||||   ||||| ||   ||||||| |  | |    ||  |    ||| | |   |||| || | ||  |||| |  ||||||    ||
TCAAATTTTTGAGGGACATTCACACTATGTGATGCAGGTTACTTTCAACCCAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgccttgacaata--ttatggagcaagatgttagttgcgac---tgagtcaagatgtgat--cttgttcattcatacttctcactctgaaattgtag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G000645_T03 (Zea mays), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctg---tttcacaatctcttatgcagtg-gatgttattcacaatatatggctttttatgaggtgat-ttgtgcactaatggttctaaaactgaaacaacag
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||| ||   |||  ||||   |||||||| | |||||||    | |           | |||| ||||| |||| || | ||  |||| |   |||| |  |||
TCAAATATTTGAGGGACATTCACACTATGTGATGCAGGTTACTTTCAATCCAAAGGATATTAACACCTTTGCAAGTGCATCCCTTGACCGCACTACAAAGgtatgcctttttgcaata--ttatgcagcgagatgttaactgcgac----------tcatgatgtgatcttgttcatttatacttcttactttgaa-ctgcag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G419984_T01 (Zea mays), 5'ss of exon 5
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctg---tttcacaatctcttatgcagtg-gatgttattcacaatatatggctttttatgaggtgat-ttgtgcactaatggttctaaaactgaaacaacag
|||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||| ||   |||  ||||   |||||||| | |||||||    | |           | |||| ||||| |||| || | ||  |||| |   |||| |  |||
TCAAATATTTAAGGGACATTCACACTATGTGATGCAGGTTACTTTCAATCCAAAGGATATTAACACCTTTGCAAGTGCATCCCTTGACCGCACTACAAAGgtatgcctttttgcaata--ttatgcagcgagatgttaactgcgac----------tcatgatgtgatcttgttcatttatacttcttactttgaa-ctgcag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctg-------tttcacaatctcttatgcagtggatgttattcaca-atatatggctttttatgaggtgatttgtgcactaatggttctaa---aactgaaacaacag
 || || |||||||||||||| || || || |||||||| || || ||||| || || || ||||| ||||| |||||||||||||| || || | |||||| |        | |         || ||   || || || ||     || |         |||||    | ||    | |||||  |  |    | ||       |||
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatacatgtgttcttcttgctagttgtgtcctgcattttctttgtttatttccaaacacctatgataaaaattaaaaagtaatgtattaatgttatcttttcttgcag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgttt-cacaatctc--------ttatgcagtggatgttattcaca-atatatggctttttatgaggtgatttgtgcactaatggttctaa---aactgaaacaacag
 || || |||||||||||||| || || || |||||||| || || ||||| || || || ||||| ||||| |||||||||||||| || || | |||||| | |        |||         || ||   || || || ||     || |       | |||||    | ||    | |||||  |  |    | ||  ||   |||
CCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGgtatatacatgtgttcttctcgctagttgtgtcctgaattttctttgtttatttccatacatctatgataaaaatttaaaagtaatgtattaatgttatcttcaattgcag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttcacaatctcttatgcagtggatgttattcacaatatatggctttttatgaggtgatt-tgtgcactaatggttctaaaactgaaacaacag
||| || || |||||||| |||||||| ||||||||||| || || |||||||| || || ||||||||||| |||||||| ||||| || || | |||||    |     |||    ||  || || |   |  | |   | ||   |  ||  |  | | ||| |  |     |||  | |  | ||  |       
TCAGATATTCGAGGGACACTCACACTATGTGATGCAAGTCACATTTAATCCAAAAGACACCAACACTTTTGCCAGTGCATCCCTTGATCGTACCATAAAGg----tgctgaaatggtcta-acattgaaacatcattatggtttagtccgcttagtccgctcattctacgtttacatgcatgttcatcttcag------

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttcacaatctcttatgcagtggatgttattca--caatatatggc-tttttatgaggtgatttgtgcactaatggttctaaaactgaaacaacag
||| || |||||||||||||| ||||| |||||||||||    || |||||||| ||||| ||||||||||| ||||| || ||||| || || | |||||| |||   |    |    |   ||    | |   | |   |  |   ||   |||||  |||   ||  |  ||||||  |  |     |  |    |||
TCAGATATTTGAGGGACATTCGCACTATGTGATGCAAGTGGTATTTAATCCAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaagaggtccaagcactgagcttttatggcttagttagcacgaggtacttttaaaagggttttcttagactaattttcatgcttgttcatattcag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttcacaatctcttatgcagtggatgttattcacaatatatggctttttatgaggtgatttgtgcactaatggttctaaaactgaaacaacag------------
||| ||||||||||| || || || || ||||||||||| || || |||||||| ||||| ||||||||||| ||||||||||| || || || |  ||||| || |     || |  | |        |||||    || | | |  |   || ||         ||       || |  | |  ||   |  | |             
TCAGATCTTTGAGGGCCACTCTCATTATGTGATGCAAGTGACATTTAATCCAAAAGATACCAACACTTTTGCTAGTGCATCTCTGGATCGCACCATTAAGgtatgatctg-gattttctgttggcaacttgttaactgcatttttttaccaattttgcttcatcaagtatgagtgtgctatttatgctctgatgatatctccttttccag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttcacaatctcttatgc--agtggatgttattcacaatatatggctttttat----gaggtgatttgtgcactaatggttctaaaactgaaacaacag
||| || ||||| || ||||| ||||||||||||||||| || || |||||||| || || ||||| ||||||||||| || || || || |||| |||||| ||  |   ||| | |  ||   |   | ||| |     || || ||  |   | |      | ||||   | ||    || || ||    |          
TCAGATTTTTGAAGGGCATTCTCACTACGTGATGCAAGTGACATTTAATCCAAAAGACACCAACACCTTTGCAAGTGCCTCCCTCGATCGCACTATAAAGgtgtgagtggaaatgtttcttgataacctgttgtgaacttgaagatgtgtttcaatgtcctaatgttgatccttccatagttgattttattgattgtgtg----

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtt-tcacaatctcttatg-----cagtggatgttattcacaatatatggcttttt---------atgaggtgatttg-tgcact--aatggttctaaaactgaaacaacag--------------------------------------------------------------
 || |||||||| |||||||| || || || |||||||| ||||||||||| || || | ||||||||||||||| || ||  | || ||||||   |||||  | | | |    ||   |||     |  | |   ||||  ||   |      | | |         | || | | |||  | ||||  | | ||| |  || ||       ||                                                              
CCAGATCTTTGAAGGACATTCTCATTATGTCATGCAAGTGACTTTCAATCCCAAAGACAGTAACACTTTTGCAAGCGCTTCCTTGGATCGAACTGTTAAGgtgagatattatgtgcttcgatgttcttctattggcattatgtacgtaaagaaattctatgaaaaaaaaaggaagagttttaatccactcgacttgttgtggaa-tgcttttttagggtagtgttctaaacgtatatcgccatattgagttgatcagatgagctctgtctttgtatag

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 6
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttcaca------atctcttatgcagtggatgttattcacaatatatggctttttatgaggtgatttgtgcactaatggttctaaaactgaaacaacag
 |||||||||||||| |||||||| || || |||||||| ||  |||| || ||||| |  |||||||| |||||||||||| | || || || |  |||||   | | |        | | ||| ||     | |  |  |      | |  |  ||   | || | | |||||    |||  || | |   |   ||     
CCAAATCTTTGAGGGGCATTCACATTATGTCATGCAAGTGACCATCAACCCGAAGGACAACAACACTTTCGCAAGTGCATCTTTAGATCGCACCATCAAGgtacttctgaagtgatgcagcgcttctgggcatgtttatgcttgtttgaaagagtattcactcagctaaattgtgtcaaaatatttttgattttattact----

upper sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 6
lower sequence: EFJ09529 (Selaginella moellendorffii), 5'ss of exon 3
TCAAATCTTTGAGGGACATTCACACTACGTGATGCAAGTTACTTTCAATCCAAAGGATACTAACACTTTTGCAAGTGCATCTCTTGACCGAACTACAAAGgtctgtttcacaatctcttatgcagtggatgttattcacaatatatggctttttatgaggtgatttgtgcactaatggttctaaaactgaaacaacag
 || ||||| || || || || |||||||||||||||||  || |||| ||||||||||||||||| || || ||||| ||| | || || || |  |||||  |||      ||  ||| |  |||  ||||            || |||||  |   |||  ||||                              
CCAGATCTTCGAAGGCCACTCCCACTACGTGATGCAAGTCGCTCTCAACCCAAAGGATACTAACACCTTCGCCAGTGCCTCTTTGGATCGGACCATCAAGgtgcgttc----gtcgttta-gaggtgattgtt------------tgacttttcttcttgtg-cttgtag----------------------------