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TTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATgtatgctatcttttgtttaattatttgtcatctggttttattctggtggttctgctcccatttagtttgtattgttttctatcactcatgttgctgagta...
species | Oryza sativa |
transcript | LOC_Os06g02620.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGAT TTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGEST: gi|2312433|gb|C28588.1|C28588
genomic: CGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATgtatgctatc ... tataatgaagTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAG
EST: CGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGAT TTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAGEST: gi|13807365|gb|AU181927.1|AU181927
genomic: CGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATgtatgctatc ... tataatgaagTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAG
EST: CGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGAT TTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAG
genomic: CGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATgtatgctatc ... tataatgaagTTCTTTAGAAACATATTCAGAGAGAGAGAATTTAGCGGGCATGATGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGCTGGAGGAGGACCTGGTGGTGCATATGAAGGGGGTTTTGGCAATCCGTTTGAGGATATTTTTGGTGGAGGTGGCGGCGGCGGTGGAATGAATGATgtatgctatcttttgtttaattatttgtcatctggttttattctggtggttctgctcccatttagtttgtattgttttctatcactcatgttgctgagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctccc