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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCTAGTTACAAAGGAGCTCATCAAGATAGCAGATTTTGGACTTGCTCGTGAGATTTCTTCTGAACCACCATACACAGAATATGTGTCAACTCGCTGgtgcgccatgcaattcttatacttgttaaactatatacacaacaacagaatttagataggagtattaaatatccacttgttcactatcaacatag

Basic information

species Oryza sativa
transcript LOC_Os06g02555.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g02555.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G864414_T02 (Zea mays), 5'ss of exon 9
ATTTGCTAGTTACAAAGGAGCTCATCAAGATAGCAGATTTTGGACTTGCTCGTGAGATTTCTTCTGAACCACCATACACAGAATATGTGTCAACTCGCTGgtgcgccatgc---aattcttatacttgttaaactatatacacaacaacagaatttagataggagtattaaatatccacttgttcactatcaacatag
||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||||||||| ||||| ||||  |  |||    ||  | |||| ||  | ||   | || | || || |||||  | ||   | |      |||| ||| |                
ATTTGCTTGTTACAAAGGAACTCATCAAGATAGCGGATTTTGGGCTTGCTCGTGAAATTTCTTCTGAGCCACCTTATACGGAATATGTGTCCACTCGTTGgtaggttatgtttgaaggcctatattttcttaaa-gtgtagaaaataatagaataaacattctaatgcctgctatcaactag----------------

upper sequence: LOC_Os06g02555.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 6
ATTTGCTAGTTACAAAGGAGCTCATCAAGATAGCAGATTTTGGACTTGCTCGTGAGATTTCTTCTGAACCACCATACACAGAATATGTGTCAACTCGCTGgtgcgc----------catgcaattcttatacttgttaa---actatatacacaacaacagaatttagataggagtattaaatatccacttgttcactatcaacatag-----------
| ||| | |||||||| ||  | || || || || |||||||| |||||||| |||||   |||| ||||||||||||| |||||||| || || ||||||| ||            |     || |     || ||||     |   | |   | |    ||| |   |   | ||||   | |  | ||  | |  |  || |||            
ACTTGTTGGTTACAAAAGATGTAATAAAAATTGCTGATTTTGGTCTTGCTCGGGAGATCAATTCTCAACCACCATACACGGAATATGTCTCTACACGCTGgtacgtgtttttgggttacttgtttgtcccctttattaatgtgttgcgtccttcaaatttcaatctccctgatattatttggt-tgtattttgttatcactaaaatatggacatggcag