1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacacagctcatcgtgctgtattacatgcttcgctaatattagcacacttgatgaacttatttctatcctattttttttttctgcag
species | Oryza sativa |
transcript | LOC_Os06g01700.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88488952|gb|CI426223.1|CI426223
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACNACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88272480|gb|CI386335.1|CI386335
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88514150|gb|CI441656.1|CI441656
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88256727|gb|CI359115.1|CI359115
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88253980|gb|CI352606.1|CI352606
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88479412|gb|CI416683.1|CI416683
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: TAACNACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88518477|gb|CI446131.1|CI446131
genomic: TAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|88440348|gb|CI549229.1|CI549229
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACEST: gi|86598199|gb|CI354816.1|CI354816
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
EST: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAG GTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
genomic: AACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacac ... ttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgtttacacacagctcatcgtgctgtattacatgcttcgctaatattagcacacttgatgaacttatttctatcctattttttttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA