1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTgtaagtcaacgttgtaacaactttggaaataactattttgcatgctttatttaatctattcttagaaccataagcctaatgtttctgtcatatatggaatggattggttttatctattatatcttcaataattttgattttgagattgttgattcaaaacttcctgtatttttgcag
species | Oryza sativa |
transcript | LOC_Os05g46580.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGT TCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCCEST: gi|58603777|gb|CK014305.1|CK014305
genomic: ATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTgtaagtcaac ... atttttgcagTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCC
EST: ATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGT TCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCC
genomic: ATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTgtaagtcaac ... atttttgcagTCACCGCCGCATTGTTCAATATAAGACATCCTACTATTCATTTTATCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGAGTTCAAGACAGCTTCAGGTCAATTGCTAGACCTTATCACTACTCACGAGGGAGAAAAAGATCTAAACAAATATAACATAGGAGTgtaagtcaacgttgtaacaactttggaaataactattttgcatgctttatttaatctattcttagaaccataagcctaatgtttctgtcatatatggaatggattggttttatctattatatcttcaataattttgattttgagattgttgattcaaaacttcctgtatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA