1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgactgacctatgaactctgatgtgagcatttgcaaagcctgagcgacttttttcatgcccccatttggactcag
species | Oryza sativa |
transcript | LOC_Os05g46360.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAG CAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCEST: gi|88515323|gb|CI442977.1|CI442977
genomic: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgac ... ttggactcagCAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATC
EST: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAG CAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCEST: gi|5005166|gb|AU070328.1|AU070328
genomic: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgac ... ttggactcagCAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATC
EST: AATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGCAG CAATACACTC-GTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATEST: gi|112786818|gb|EE591496.1|EE591496
genomic: AATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGG-AGgtaatttgac ... ttggactcagCAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGAT
EST: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAG CAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCEST: gi|86866134|gb|CI336840.1|CI336840
genomic: AAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgac ... ttggactcagCAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATC
EST: AATATTTGTATCTGCACCAACTGCAAGTGAAGTTGCTGACAAAGATGGAG CAATACACTCGGTTGCACCAGGAGGGTGGCCCCTGCAACAAGCTGGGAGAT
genomic: AATATTTGTATCTGCACCAACTGCAAGTGAA-TTGCTGACAAAGATGGAGgtaatttgac ... ttggactcagCAATACACTCGGTTGCACCAGGA-GGTGGCCCCTGCAACAAGCTGGGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGgtaatttgactgacctatgaactctgatgtgagcatttgcaaagcctgagcgacttttttcatgcccccatttggactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA