1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTACTGCTGTAACGTATACTATGCTTTCTGGGGAAGGACAGTTATACACATACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagtatacaaatatgttgcatagaattttgttttggtatcatcttcaatccatcagtccatctaaactgctattctctcccctttgtgttatcaag
species | Oryza sativa |
transcript | LOC_Os05g43540.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATG GTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGGEST: gi|88839208|gb|CI378132.1|CI378132
genomic: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagt ... tgttatcaagGTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGG
EST: CATGAGTTTTCATCTCCAGAGACTACTACACCTGGAATCAACCTAAGATG GTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGGEST: gi|33691827|gb|CF320066.1|CF320066
genomic: CATGAG-TCTCATCT-CAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagt ... tgttatcaagGTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGG
EST: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATG GTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGGEST: gi|88296681|gb|CI537648.1|CI537648
genomic: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagt ... tgttatcaagGTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGG
EST: TACTACACCTGGAATCAACCTAAGATG GTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGGEST: gi|29666719|gb|CB662994.1|CB662994
genomic: TACTACACCTGGAATCAACCTAAGATGgtaactgagt ... tgttatcaagGTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGG
EST: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATG GTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGGEST: gi|11544398|gb|BF475216.1|BF475216
genomic: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagt ... tgttatcaagGTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGG
EST: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATG GTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGEST: gi|29666720|gb|CB662995.1|CB662995
genomic: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagt ... tgttatcaagGTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAG
EST: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATG GTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGG
genomic: TACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagt ... tgttatcaagGTTCCTTGATGTTGCTGGAATGAAAAGATCCAAAAGATACGTTGTTAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACTGCTGTAACGTATACTATGCTTTCTGGGGAAGGACAGTTATACACATACATGAGTCTCATCTCAGAGACTACTACACCTGGAATCAACCTAAGATGgtaactgagtatacaaatatgttgcatagaattttgttttggtatcatcttcaatccatcagtccatctaaactgctattctctcccctttgtgttatcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG