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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGCAGCCTGCCTATTTTGGAATATCATAGCAACCACAACCGCATGGGTAAAAGGGGAAGgtaaagctaaagtgtacccaaccgtctacattgtatgaaatgtgccatgaatgttgacactcaaaactaataggtgttctgtgctttgacag

Basic information

species Oryza sativa
transcript LOC_Os05g42330.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G100809_T01 (Zea mays), 5'ss of exon 6
GATTGGCAGCCTGCCTATTTTGGAATATCATAGCAACCACAACCGCATGGGTAAAAGGGGAAGgtaaagctaaa-gtgtac--------------ccaaccgtctacattgtatgaaatgtgccatgaatgttgacactcaaaactaataggtgttctgtgctttgacag
|||||  ||| ||||| |||||||||||||||||||| ||||| |||||| | ||||||||||||| | ||||  ||||                ||| |    | ||| | |     |     |   |   |   | |  ||||||||| |   | | | |||  | ||
GATTGATAGCGTGCCTCTTTTGGAATATCATAGCAACTACAACAGCATGGATTAAAGGGGAAGgtacaactaatcgtgttttattgtcacatcctccatcttcttccatagcacatgttaccttactgacacttcaattttaaactaatatgacctatctacttcaaaag

upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G174730_T01 (Zea mays), 5'ss of exon 6
GATTGGCAGCCTGCCTATTTTGGAATATCATAGCAACCACAACCGCATGGGTAAAAGGGGAAGgtaaagctaaagtgtacccaaccgtc--tacattg---------tatgaaa---tgtgccatgaatgttgacactcaaaactaataggtgttctgtgctttgacag
|||||  ||| || || ||||||||| |||||||||| ||||| |||||| | ||||||||||||| | ||||||||| ||  || |||    ||||           || | |   ||    |   | | |   | |  ||||||||| |   | | | |||  | ||
GATTGATAGCGTGTCTCTTTTGGAATGTCATAGCAACTACAACAGCATGGATTAAAGGGGAAGgtataactaaagtgtgccttactgtcatctcatttatcttcctccatcacactttgccttactgacgcttcaagttcaaactaatatgacctatctacttcaaaag