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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTAATGGTTATTGGAAAGAAACTCCTTAGTATTGAAGGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGCCAGgtatgtgaactacaagtcccttttacatgcaaatgagtcaattttgttgtttttgtctatggattttatttatgtttgatatttcaagttctcatattat...

Basic information

species Oryza sativa
transcript LOC_Os05g41580.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 7
TACTCTAATGGTTATTGGAAAGAAACTCCTTAGTATTGAAGGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGCCAGgtatgtgaactacaagtcccttttacatgca---aatgagtcaattttgttgtttttgtctatggattttatttatgtttg-atatttcaagttctcatattat
|||||| ||| ||| ||| ||||   ||||||  || ||||| ||  |  |||||| ||| |||||||| ||||||||||||||||| || ||||||||||||||   | | |||| | | ||| |    |   ||||  |  | |||||     ||    || |  ||  |   |    | |  |  ||| |||   ||    
TACTCTCATGTTTAATGGGAAGAGGATCCTTAACATCGAAGGCCCAAATGCTGATAGAACTATCAATACCCTCATATTCAACTCTTTTGTGTTTTGCCAGgtatgactagttcaagccaccttttctgatacctaatgcttgcaatttgtgaagctttgacattggcttactcagtagcagtaagtagcaaattcaacta----

upper sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 6
TACTCTAATGGTTATTGGAAAGAAACTCCTTAGTATTGAAGGTCCTCAATCTGATAAAACCATCAATACTCTCATATTCAACTCTTTCGTCTTTTGCCAGgtatgtgaactacaagtcccttttacatgcaaatgagtcaattttgttgtttttgtctatggattttatttatgtttgatatttcaagttctcatattat
 |  || |   ||  ||| ||  || | || |   || | || ||  | ||    |      |||| ||  | || |||||||||||||||||||||||||||     |  | |  | |    || |      | | | || ||      |  || || || |    |                                
CATCCTCAACTTTGCTGGCAAACAAATACTCAACCTTAATGGCCCAGATTCAACAATTGTTCTCAACACAATTATCTTCAACTCTTTCGTCTTTTGCCAGgta---agaacaaacattcaccataaaaaagtttaaatgaaattaaacactaatg-ctttgcacaaaacag-----------------------------