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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttttcccaggggtaatatgaaactctttttcattttaccttttgagtgttccatattagctactgatgcaaatcctggctgccatgttaactttgcacctttgaattcaactattgtgttctctttccatattctgacatatcatactccag

Basic information

species Oryza sativa
transcript LOC_Os05g39230.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g39230.2 (Oryza sativa), 5'ss of exon 6
lower sequence: AC197705.4_FGT011 (Zea mays), 5'ss of exon 7
CAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttttcccaggggtaatatgaaactctttttcattttaccttttgagtgttccatattagctactgatgcaaatcctggctgccatgt-taactttgcacctttgaattcaactattgtgttctct----ttccatattctgaca------tatcatactccag
|||||| || |||||||||||||| ||  ||||||||||||||||||||||||| ||   | | |||||||||       ||   |    || ||   || |   ||| |         |||   |  ||  | | ||||| ||| || |   |   |||  ||  |||||||| |  ||||    |||| |||| | |     ||  | |  |||||       ||||| || |||
CAATGTGGTTGCTGCAACTGATTTGACCATGATGGCATTGGCAGGAATAGGCCTTCGATGCAACAAGgtaaaa-------caaaag--gcattaagtactatcctattctg------aggtggctcccatgtgttgctgatacaagtcatta-tataatgcctatttttgcaccatcaaatt--ggtattctgttgtttgaaactctttgtgttgacaacttgacatcatgcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29689746|gb|CB686021.1|CB686021
EST:     CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAG                         AAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTA
genomic: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttt ... catactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTA
EST: gi|58602199|gb|CK012727.1|CK012727
EST:     CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAG                         AAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGG
genomic: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttt ... catactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGG
EST: gi|8856717|gb|AU094035.1|AU094035
EST:     CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAG                         AAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTA
genomic: CTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGgtaaaagttt ... catactccagAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTA