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AACCTCGACCCGTACACCAATCTACAAGGCATATGCAAAAGGAGAAAATATTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattcatcttttgcattttgtttcttgttggtctggttaccatacatgtagcttatatattctgctggcatcatttatgttaatagtatgctggctactaaaatttgtcttattcagtactgcacttatatgaaaatttgcattcaatagttcactgatatttctgtctttttatgtgtgaag
species | Oryza sativa |
transcript | LOC_Os05g34650.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTG TTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTGEST: gi|33666778|gb|CF297745.1|CF297745
genomic: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattc ... atgtgtgaagTTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTG TTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTGEST: gi|58666538|gb|CK055224.1|CK055224
genomic: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattc ... atgtgtgaagTTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTG TTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTGEST: gi|58684548|gb|CK073235.1|CK073235
genomic: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattc ... atgtgtgaagTTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTG TTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTGEST: gi|29645586|gb|CB650593.1|CB650593
genomic: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattc ... atgtgtgaagTTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTG TTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTGEST: gi|58674742|gb|CK063429.1|CK063429
genomic: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattc ... atgtgtgaagTTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTG
EST: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTG TTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTG
genomic: TTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattc ... atgtgtgaagTTGGGAACTGGTTTGAGCATTTTAATTTCTAAGAGGAATCCATCATTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTCGACCCGTACACCAATCTACAAGGCATATGCAAAAGGAGAAAATATTGGAGATGTCACTGCCAAAGGAGAAAGTGTTGGGAACATTGCTGATCTGgtaatcattcatcttttgcattttgtttcttgttggtctggttaccatacatgtagcttatatattctgctggcatcatttatgttaatagtatgctggctactaaaatttgtcttattcagtactgcacttatatgaaaatttgcattcaatagttcactgatatttctgtctttttatgtgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT