1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGTCAAACAAAGAATGCAAACAGGTCAATTCAGGTCTGCACCTGATGCTGTTCGTCTCATTGTTGGTAAAGAAGGATTCAGAGGTCTTTACGCTgtatgtatcttctgacctcatatatggtggaacctgtatttagccgattcaactctaatttttgttatccctgtatatttcaggaaaaataattatttgaatctgtttaatatgcctttttaattgaattgttgttacaatggaaaaaaactcattgccttccttgtcatactgtttctttttgtttgtag
species | Oryza sativa |
transcript | LOC_Os05g29860.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGTTCGTCTCATTGTTGGTAAAGAAGGATTCAGAGGTCTTTACGCT GGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTCEST: gi|66915672|gb|CX102520.1|CX102520
genomic: ATGCTGTTCGTCTCATTGTTGGTAAAGAAGGATTCAGAGGTCTTTACGCTgtatgtatct ... ttgtttgtagGGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTC
EST: GCTGTCCGTCTCATTGTTGGTAAAGAAGGATTCATTAGGTCTTTACGCT GGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTCEST: gi|33683403|gb|CF311642.1|CF311642
genomic: GCTGTTCGTCTCATTGTTGGTAAAGAAGGATTCA-GAGGTCTTTACGCTgtatgtatct ... ttgtttgtagGGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTC
EST: ATGCTGTTCGTCTCATTGTTGGTAAAGAAGGATTCAGAGGTCTTTACGCT GGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTC
genomic: ATGCTGTTCGTCTCATTGTTGGTAAAGAAGGATTCAGAGGTCTTTACGCTgtatgtatct ... ttgtttgtagGGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCAAACAAAGAATGCAAACAGGTCAATTCAGGTCTGCACCTGATGCTGTTCGTCTCATTGTTGGTAAAGAAGGATTCAGAGGTCTTTACGCTgtatgtatcttctgacctcatatatggtggaacctgtatttagccgattcaactctaatttttgttatccctgtatatttcaggaaaaataattatttgaatctgtttaatatgcctttttaattgaattgttgttacaatggaaaaaaactcattgccttccttgtcatactgtttctttttgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG