1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTTAGTGTGTCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatagctgcttttatttgaaggattgtcttctgtttgctttttttttttacatttttttttaattacgacgcacag
species | Oryza sativa |
transcript | LOC_Os05g28280.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACEST: gi|58587681|gb|CF985989.1|CF985989
genomic: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
EST: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACEST: gi|6850180|gb|AU082299.1|AU082299
genomic: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
EST: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGNCEST: gi|58684011|gb|CK072698.1|CK072698
genomic: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
EST: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGEST: gi|33793355|gb|CF322559.1|CF322559
genomic: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAG
EST: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACEST: gi|8856487|gb|AU093805.1|AU093805
genomic: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
EST: AAATGAAGTGTATGCCAATTGATATTGTCACCAGCANTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACEST: gi|58686553|gb|CK075240.1|CK075240
genomic: AAATGAAGTGTATG-CAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
EST: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGACEST: gi|13806640|gb|AU181604.1|AU181604
genomic: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
EST: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAG CCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
genomic: AAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatag ... cgacgcacagCCCAAGTTATTGGATGAGAAGCAGACCACCATCTACAAGAGAGCTGTAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTAGTGTGTCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatagctgcttttatttgaaggattgtcttctgtttgctttttttttttacatttttttttaattacgacgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA