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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccagctaaccataaccaaatcccattgtttcttatgactatgttgttgtagggttacaggtgcttgccagctaacataaataggattgcag

Basic information

species Oryza sativa
transcript LOC_Os05g26914.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g26914.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G856084_T01 (Zea mays), 5'ss of exon 6
AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccagctaaccataaccaaatcccattgtttcttatgactatgttgttgtagggttacaggtgcttgccagctaacataaataggattgcag---
||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||  ||   ||||  ||| ||| |        |   | | |   || ||||| |||||  |   |    ||| || || | |||||  | |   
AGATCCTGGTGCTGAACAAAAGTTCAAGGATATCAGTAATGCTTATGAGgttgggcccactgttcatactcaactccaaaatccaaattccatt-ttcggtagtaggattacacatttatttatgcttacgtagaaaggatgtctgtag

upper sequence: LOC_Os05g26914.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G091811_T01 (Zea mays), 5'ss of exon 6
AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccagctaaccataaccaaatcccattgtttcttatgactatgttgttgtagggttacaggtgcttgc-cagctaacataaataggattgcag
|||||||||||||||||||||||||||||| || |||||||||||||||||| | ||| ||   ||||   |  ||| | |   | || ||    |   | || |   |||    ||||| |  ||| |  ||  ||    ||| ||
AGATCCTGGTGCTGAACAAAAGTTCAAGGAAATCAGCAATGCTTATGAGgttgggccaactgttcatacttagctccaaattccttttttggtagtag-gatgcacatttatttatgcttacatagcaaggatgtatg---ttgtag

upper sequence: LOC_Os05g26914.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA08G14290.1 (Glycine max), 5'ss of exon 6
AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccagctaaccataaccaaatcccattgtttcttatgactatgttgttgtagggttacaggtgcttgccagctaacataaataggattgcag
||| ||||||||||||||||| || ||||| ||||||||||| |||||||| |    | |||   || |  |||  |   |    ||||||  ||||||           | |  | ||   | |  ||  |||||   |   |||
AGAACCTGGTGCTGAACAAAAATTTAAGGAAATTAGCAATGCCTATGAGgtaa----aactacagattattaaactcagcttgcccttatgcatatgttt------aacaataattcctcttctgtgaa--taaattccaccacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58608089|gb|CK036122.1|CK036122
EST:     AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAG                         GTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
genomic: AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccag ... aggattgcagGTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
EST: gi|58656403|gb|CK045083.1|CK045083
EST:     GTTCAAGGATATTAGCAATGCTTATGAG                         G-TTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
genomic: GTTCAAGGATATTAGCAATGCTTATGAGgttagtccag ... aggattgcagGTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
EST: gi|58673732|gb|CK062418.1|CK062418
EST:     AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAG                         GTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
genomic: AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccag ... aggattgcagGTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
EST: gi|58660788|gb|CK049468.1|CK049468
EST:     AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAG                         GTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
genomic: AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccag ... aggattgcagGTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
EST: gi|58676612|gb|CK065299.1|CK065299
EST:     AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAG                         GTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT
genomic: AGATCCTGGTGCTGAACAAAAGTTCAAGGATATTAGCAATGCTTATGAGgttagtccag ... aggattgcagGTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCT