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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGgtaaactacgcgcaccaccataaattgttaatcccatgagggtttagaatgcaagatataataggtattatgtcttggttgacaatgacag

Basic information

species Oryza sativa
transcript LOC_Os05g24550.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29688861|gb|CB685136.1|CB685136
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|58688070|gb|CK076757.1|CK076757
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|27578059|gb|CB000754.1|CB000754
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|29686789|gb|CB683064.1|CB683064
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|33798896|gb|CF325305.1|CF325305
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|58693640|gb|CK082327.1|CK082327
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|33806214|gb|CF328987.1|CF328987
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     TGGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|29640250|gb|CB645259.1|CB645259
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|58609130|gb|CK037163.1|CK037163
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|66923450|gb|CX110298.1|CX110298
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG
EST: gi|29656220|gb|CB652495.1|CB652495
EST:     TTGGGACCATACTTGATCAG
genomic: TTGGGACCATACTTGATCAG