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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGCATGCTGCGGTTTCATGTGCGGCGATGGTTGTGATGGAGGCTATCCTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtccattttctacatgctatgacatgaatgtttctgcatgatccagcagtaatcctatatgtgaatatttttttcccggctcctgcaacattagttcagcttgatatactcagaaaatgcacattttccattgttttgcag

Basic information

species Oryza sativa
transcript LOC_Os05g24550.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g24550.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G108849_T01 (Zea mays), 5'ss of exon 6
AGTGGCATGCTGCGGTTTCATGTGCGGCGATGGTTGTGATGGAGGCTATCCTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcc----------attttctacatgctatgacatgaatgtttctgcatgatccagcagtaatcctatatgtgaatatttttttcccggctcctgcaacattagttcagcttgatatactcagaaaatgcacattttccattgttttgcag
| |||||||||||||||| |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||  |||||||||||||| |||||||||| |  |          ||||||| | | | || || ||||| | |||| ||| | |||||| |||||||   ||    |   ||||    | |||| ||                                                      
ACTGGCATGCTGCGGTTTTATGTGCGGCGATGGGTGTGATGGAGGCTATCCTATAGAGGCATGGCGCTACTTTGTTCAAAATGGTGTTGTTACGGATGAGgtataggtctattcgtgtaattttcttctttccatcacttgaatttctctgtatgcttcagcagcaatcctactagttctaagacttttat--gatcctaca------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688070|gb|CK076757.1|CK076757
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: gi|29666315|gb|CB662590.1|CB662590
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: gi|29680417|gb|CB676692.1|CB676692
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: gi|29658207|gb|CB654482.1|CB654482
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: gi|29686790|gb|CB683065.1|CB683065
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: gi|29639549|gb|CB644558.1|CB644558
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: gi|58609130|gb|CK037163.1|CK037163
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
EST: gi|58610249|gb|CK038121.1|CK038121
EST:     CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAG                         TGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT
genomic: CTATCATGGCATGGCGCTACTTTGTTCGGAATGGTGTTGTTACCGATGAGgtattgtcca ... tgttttgcagTGCGATCCATACTTTGATCAGGTCGGTTGTAAGCATCCAGGATGCGAACCT