1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGTTAATTCGATATCTTGTGGTCCACCTGGTTGCCATGTGGTAAATGGAATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaatatttttcttatgttttgttctaatgcttgtcttgttgttttatcgctctataaacggcattatgataagatggacaatgtaaactctgttt...
species | Oryza sativa |
transcript | LOC_Os05g12170.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATCEST: gi|29637797|gb|CB642806.1|CB642806
genomic: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
EST: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATCEST: gi|86595095|gb|CI260334.1|CI260334
genomic: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
EST: TGGTTATAATCCGATTCGCATGAGCTCAGGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATCEST: gi|29662992|gb|CB659267.1|CB659267
genomic: TGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
EST: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATCEST: gi|29637418|gb|CB642427.1|CB642427
genomic: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
EST: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATCEST: gi|29671008|gb|CB667283.1|CB667283
genomic: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
EST: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCANGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCAEST: gi|29664499|gb|CB660774.1|CB660774
genomic: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCA
EST: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATCEST: gi|29671009|gb|CB667284.1|CB667284
genomic: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
EST: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGG CATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
genomic: ATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaata ... gtttctgaagCATGACAGAGAATGAAGTTCCTGGAACTGCACATGCTGGAGCCATGTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTAATTCGATATCTTGTGGTCCACCTGGTTGCCATGTGGTAAATGGAATTCCTGCACCAGGTGGTTATAATCCGATTCGCATGAGCTCAGGAAATGGgtaaagaatatttttcttatgttttgttctaatgcttgtcttgttgttttatcgctctataaacggcattatgataagatggacaatgtaaactctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA