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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAATATACAGGACCAAGAGTTGATGGAGACACAATAACATTAGATTTTGTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAGgtacactttgtacaagggacatacctgaagtgttttctttggttatattggttccccaggttgtttactacttaggttgataatgcag

Basic information

species Oryza sativa
transcript LOC_Os05g11550.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g11550.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G126435_T02 (Zea mays), 5'ss of exon 5
CACAATATACAGGACCAAGAGTTGATGGAGACACAATAACATTAGATTTTGTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAGgtacactttgt-acaagggacatacctgaagtgttttctttggttatattggttccccaggttgtttactacttagg-ttgataatgcag
|||| ||| | ||||| ||| ||||||| ||   ||||||  |||| |||||||| || ||||||||||| ||| |||| |||||||||||||| |||||||||| | | | | || ||    ||||  | |  ||  | |  ||||||  |||  |   ||  ||| || | ||   |||  |||||||
CACATTATGCGGGACCGAGAATTGATGGGGAAGAAATAACGATAGAGTTTGTCAAAGCAATGTTGGATGAATTTAAGAAGCAGAAATGCATACATAAAAGgtacaatctctcataacggg---acct--atttcttgttgtatttatat--gttttcttagtcattttcttcataaacttgtcaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33794510|gb|CF323142.1|CF323142
EST:     GTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAG                         GTACCGCCTACCAGATTGTGTTACAAACCGTGCAGCTATTGCGTTCTGTAC
genomic: GTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAGgtacactttg ... gataatgcagGTAC-GCCTACCAGATTGTGTTACAAACCGTGCAGCTATTGCGTTCTGTAC
EST: gi|29676952|gb|CB673227.1|CB673227
EST:     GTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAG                         GTACGCCTACCAGATTGTGTTACAAACCGTGCAGCTATTGCGTTCTGTACC
genomic: GTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAGgtacactttg ... gataatgcagGTACGCCTACCAGATTGTGTTACAAACCGTGCAGCTATTGCGTTCTGTACC
EST: gi|33793725|gb|CF322745.1|CF322745
EST:     GTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAG                         GTACGCCTACCAGATTGTGTTACAAACCGTGCAGCTATTGCGTTCTGTACC
genomic: GTCAAGGCTATGTTGGATGAGTTTGAGAAACAGAAATGCATACACAAAAGgtacactttg ... gataatgcagGTACGCCTACCAGATTGTGTTACAAACCGTGCAGCTATTGCGTTCTGTACC