1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACCATTTACACAGAAGTTCCCAAATGCAGATCCACTTGCAATGCGGTTGTTAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcagtattagcatcaaccttgcatctttttttttttttggtgtgttatctcaagtgtcagcagctaatgtagcagccacattttcag
species | Oryza sativa |
transcript | LOC_Os05g05160.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCTEST: gi|25798100|gb|CA754061.1|CA754061
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCNATGTTGATAGAGAGCCTEST: gi|58611987|gb|CK039699.1|CK039699
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTAEST: gi|58685382|gb|CK074069.1|CK074069
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTA
EST: GAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCTEST: gi|44669193|gb|CR282627.1|CR282627
genomic: GAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCTEST: gi|313081130|gb|HO213716.1|HO213716
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGG TEST: gi|313081130|gb|HO213716.1|HO213716
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGA-Ggtattgtcag ... acattttcag-
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGG TEST: gi|313081130|gb|HO213716.1|HO213716
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGA-Ggtattgtcag ... acattttcag-
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGG TEST: gi|313081130|gb|HO213716.1|HO213716
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGA-Ggtattgtcag ... acattttcag-
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGG TEST: gi|313081130|gb|HO213716.1|HO213716
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGA-Ggtattgtcag ... acattttcag-
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGG TEST: gi|58665648|gb|CK054334.1|CK054334
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGA-Ggtattgtcag ... acattttcag-
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCTEST: gi|313081129|gb|HO213715.1|HO213715
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCTEST: gi|58668494|gb|CK057180.1|CK057180
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
EST: GATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCTEST: gi|58664632|gb|CK053318.1|CK053318
genomic: GATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
EST: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAG GCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
genomic: TAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcag ... acattttcagGCGCTTGCTGATCCTTATTTCAAGAACATAGCCAATGTTGATAGAGAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATTTACACAGAAGTTCCCAAATGCAGATCCACTTGCAATGCGGTTGTTAGAGAGAATGTTAGCTTTTGATCCAAAAGATCGGCCAAGTGCTGAGGAGgtattgtcagtattagcatcaaccttgcatctttttttttttttggtgtgttatctcaagtgtcagcagctaatgtagcagccacattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG