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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCAGAGCTTTGGCGTACATTCACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttacatacttgcatttagttataatctgttttccacttattgaagctttgtggagttagtcaagtactaagttttgtttagtcagatggttgctaaaagattattacttccag

Basic information

species Oryza sativa
transcript LOC_Os05g04340.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g04340.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G155836_T01 (Zea mays), 5'ss of exon 6
ATATGCAGAGCTTTGGCGTACATTCACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttacatacttgcatttagttataatctgttttccacttattgaagctttgtggagttagtcaagtactaagttttgtttagtcagatggtt-gctaaaagattattacttccag--
|| || ||||| ||||| ||||||||||||| |||||| ||||| |||||||| || ||||| |||||||| |||||||  ||   | ||   |||   |             || | |    |  ||  |    ||||| || |  ||||    | ||   |||||||||   |  ||   ||||  | | |   
ATTTGTAGAGCCTTGGCATACATTCACAACAGCATTGGAGTGTGCCACAGGGACATTAAGCCGCAAAATCTCCTGgtatagtagtaatttctgtttgaat------------tcattaaggagaaattcatct--ttagttaaattataagcgcagctt---cagatggtttaatgcaattctatttgtgcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88742984|gb|CI766492.1|CI766492
EST:     ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTG                         GTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
genomic: ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttaca ... ttacttccagGTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
EST: gi|58679859|gb|CK068546.1|CK068546
EST:     CAACACCATTGGCGTGTGTCACAGGGGATATCAAGCCACAAAATCTTCTG                         GTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
genomic: CAACACCATTGGCGTGTGTCACA-GGGATATCAAGCCACAAAATCTTCTGgtatgttaca ... ttacttccagGTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
EST: gi|58671594|gb|CK060280.1|CK060280
EST:     ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTG                         GTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
genomic: ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttaca ... ttacttccagGTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
EST: gi|66928190|gb|CX115038.1|CX115038
EST:     ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTG                         GTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
genomic: ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttaca ... ttacttccagGTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
EST: gi|29630931|gb|CB635940.1|CB635940
EST:     ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTG                         GGGAACC-ACATACTCATCAGC
genomic: ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttaca ... ttacttccagGTGAACCCACATACTCATCAGC
EST: gi|58690705|gb|CK079392.1|CK079392
EST:     ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTG                         GTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
genomic: ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttaca ... ttacttccagGTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
EST: gi|88356165|gb|CI627613.1|CI627613
EST:     ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTG                         GTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA
genomic: ACAACACCATTGGCGTGTGTCACAGGGATATCAAGCCACAAAATCTTCTGgtatgttaca ... ttacttccagGTGAACCCACATACTCATCAGCTGAAATTATGTGACTTCGGCAGCGCGAAA