1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaactagatctttcccccttcagtttttgtcttggcgcatatagaagaaaacattgatgtgctatcaagcatagttgttagtgaagttcaggtgtt...
species | Oryza sativa |
transcript | LOC_Os05g02130.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGCTGCTTG-CGGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|5443717|gb|AU062419.2|AU062419
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|163927765|gb|EG712501.1|EG712501
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: ATTTGGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|568960|gb|D39809.1|D39809
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|33677416|gb|CF305655.1|CF305655
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGCEST: gi|38473861|gb|CF957993.1|CF957993
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
EST: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGG GAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
genomic: AGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaacta ... gtttccccagGAGAATTCCCTATTCTGTTGCGCTGAAACGGAACCATGGAGCATGTGCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGATTCGGCTGGgtgagaactagatctttcccccttcagtttttgtcttggcgcatatagaagaaaacattgatgtgctatcaagcatagttgttagtgaagttcaggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa