1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcacaactgtggatgacatgttactgttcataatctctgctcggtgaattttgcatctaccatgtctgatgtctccgagaacaatgttaatcta...
species | Oryza sativa |
transcript | LOC_Os05g01970.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGAAACAAAAACTATTGCCAGAGCAGATGTTGCAGAAGTTTGTTTACAG GCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAAEST: gi|157651325|gb|EX450959.1|EX450959
genomic: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcac ... tcctttgcagGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAA
EST: CAGAAACAAAAACTATTGCCAGAGCAGATGTTGCAGAAGTTTGTTTACAG GCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAAEST: gi|29637321|gb|CB642330.1|CB642330
genomic: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcac ... tcctttgcagGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAA
EST: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAG GCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCAEST: gi|29637203|gb|CB642212.1|CB642212
genomic: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcac ... tcctttgcagGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCA
EST: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAG GCCTTGCTATTTGAGGAGGCAAAGTTTAAGGCATTTGATCTGGCATCAAAAEST: gi|27577865|gb|CB000560.1|CB000560
genomic: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcac ... tcctttgcagGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAA
EST: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAG GCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAAEST: gi|27578266|gb|CB000961.1|CB000961
genomic: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcac ... tcctttgcagGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAA
EST: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAG GCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAA
genomic: CAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcac ... tcctttgcagGCCTTGCTATTTGAGGAGGCAAGGTTTAAGGCATTTGATCTGGCATCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGTGTGCGGGAGTTGCTTGTTGGGAAGGATGATGAGATCTTGAAGACAGAAACAAAAACTATTACCAGAGCAGATGTTGCAGAAGTTTGTTTACAGgtaccttcacaactgtggatgacatgttactgttcataatctctgctcggtgaattttgcatctaccatgtctgatgtctccgagaacaatgttaatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT