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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGTCTGTGCACGCACAGCTTGGGCATACATGAAATCTGGTGGTCGTATTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAGgttccttgtgtattctttagatttctaaaagcaatgtaatgacaggaaaaatactaattcatataactttcag

Basic information

species Oryza sativa
transcript LOC_Os05g01470.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01470.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G098039_T01 (Zea mays), 5'ss of exon 6
GCCTGTCTGTGCACGCACAGCTTGGGCATACATGAAATCTGGTGGTCGTATTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAGgttccttgtgtattcttta--gatttctaaaagcaatgtaatgacaggaaaaatactaat----tcatataactttcag
|||| ||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||| |||| ||  ||| ||||| || |||    ||||||    |||| || |    | ||  |||||||||
GCCTATCTGTGCTCGCACAGCCTGGGCATACATGAAATCTGGTGGTCACATTTCACATGCTTTGTCTGTGTATAGCTGTCAACTTCGCCAGCCCAACCAGgttacttttgtgttctctaatgatctctaagagtaataatgtgacagttggaatagtactcttattattgaactttcag

upper sequence: LOC_Os05g01470.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 7
GCCTGTCTGTGCACGCACAGCTTGGGCATACATGAAATCTGGTGGTCGTATTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAGgttccttgtgtattctt-tagatttctaaaagca-atgtaatgacaggaaaaatactaattcatataactttcag----------------
|||  | ||||| || ||||| ||||| ||   |||  | ||||| || ||||| |||||||| ||||| || |||||||||||||| ||||| || ||||||     |  ||| |  ||  |  ||     || || |    || |       |  ||   |||    |   |                 
GCCCATTTGTGCTCGAACAGCATGGGCCTATGGGAAGGCCGGTGGCCGCATTTCTCATGCTTTATCAGTTTACAGCTGTCAACTTCGTCAACCAAATCAGgtttgaaattcattttcatatttacctgtggacatattttgcaactgatggggcaggaaagtatagtgataataatggaatacactaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673143|gb|CK061829.1|CK061829
EST:     TTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAG                         GTGAAGAAAATATTTGAGTTTCTTAAAGATGGGTTCCATGAAGTCAGCAGC
genomic: TTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAGgttccttgtg ... taactttcagGTGAAGAAAATATTTGAGTTTCTTAAAGATGGGTTCCATGAAGTCAGCAGC
EST: gi|25798544|gb|CA754505.1|CA754505
EST:     TTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAG                         GTGAAGAAAATATTTGAGTTTCTTAAAGATGGGTTCCATGAAGTCAGCAGC
genomic: TTTCACATGCTTTGTCAGTGTATAGCTGTCAACTTCGCCAACCCAACCAGgttccttgtg ... taactttcagGTGAAGAAAATATTTGAGTTTCTTAAAGATGGGTTCCATGAAGTCAGCAGC