1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcatagtccgttttatggtttaaattgcatatcccatatagtatagtattggtcatgcatacatctgttattgtccttaacaatatgtttttag
species | Oryza sativa |
transcript | LOC_Os04g59040.2 |
intron # | 6 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTGGCCTGCCAEST: gi|88266037|gb|CI376939.1|CI376939
genomic: GTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86873424|gb|CI341649.1|CI341649
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|33684219|gb|CF312458.1|CF312458
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86527296|gb|CI167502.1|CI167502
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88320691|gb|CI525633.1|CI525633
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86834579|gb|CI340696.1|CI340696
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86846050|gb|CI347237.1|CI347237
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88384252|gb|CI551178.1|CI551178
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|33684220|gb|CF312459.1|CF312459
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGGAGGTTGCTGTTGATGCATTCTTGCCTGCCEST: gi|89171018|gb|CI040295.1|CI040295
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGG-AGGTTGCTGTTGATGCATTCTTGCCTGCC
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88450730|gb|CI549816.1|CI549816
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88291938|gb|CI532530.1|CI532530
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88963306|gb|CI028322.1|CI028322
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88441295|gb|CI538738.1|CI538738
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88555507|gb|CI485770.1|CI485770
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGAGT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|88965200|gb|CI009236.1|CI009236
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|86498205|gb|CI140838.1|CI140838
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAEST: gi|55434347|gb|CV730295.1|CV730295
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
EST: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACT ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
genomic: TGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcat ... atgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctcatagtccgttttatggtttaaattgcatatcccatatagtatagtattggtcatgcatacatctgttattgtccttaacaatatgtttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA